« Back to Quercus suber search


Detailed information on CNT3069232


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 1e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Quercus suberOryza sativa27.6430.0583.97131forward
CNT30700039Quercus suberQuercus lobata76.1673.8296.95361forward
CNT30376827Quercus suberArabidopsis thaliana18.3536.8685.0687forward
CNT30712448Quercus suberGlycine max27.4330.5981.54130forward
CNT30125320Quercus suberPhyscomitrium patens21.3110.3883.17101forward
CNT30606039Quercus suberGossypium raimondii23.8423.8483.19113forward
CNT30361473Quercus suberSorghum bicolor23.4220.6385.59111forward
CNT30596421Quercus suberOryza meridionalis21.3114.3985.15101forward
CNT30154413Quercus suberPrunus persica20.6825.3283.6798forward
CNT30328607Quercus suberAsparagus officinalis23.2119.2383.64110forward

Expression of CNT3069232

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MFKLKISKIKKKPLISISANDYTTKHSWLQMQPQLRSNITI*

Sequence

>CNT3069232
GCAATGTCCATAATCAACATTTCTTTAAATGTTTAAACTTAAAATTAGCAAAATAAAAAAGAAACCATTAATTTCCATTAGTGCAAATGACTACACTACA
AAACATTCATGGCTTCAAATGCAGCCTCAACTGCGTTCAAACATAACCATCTAAACCCTAAGAAACAAAGCAAGACCATAATATAGATCTGGCACCCCAT
TCCAACCCAAAACCCTTTTATCTACACGAACTCCTTCACTCTAAGCACGCTCACCCCTGATCCTCCTAGCGAGCTGAATATCCTTGGGCATGATGGTGAC
TCTCTTAGCATGAATAGCGCAGAGATTTGTGTCCTCAAAGAGCCCCACAAGGTAAGCCTCCGCGGCCTCTTGTAGCGCAGCCACGGCCGAGCTCTGGAAT
CGGAGATCGGTCTTGAAATCCTGAGCGATTTCACGAACCAAGCGCTGGAATGGGAGCTTTCGGATCAAGAGCTC