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Detailed information on CNT30692309


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553434Oryza sativaOryza glaberrima31.3224.392.6311reverse complement
CNT30107954Oryza sativaOryza longistaminata51.4630.8997.65511reverse complement
CNT30576960Oryza sativaOryza barthii46.4219.198.92461reverse complement
CNT30604708Oryza sativaOryza punctata70.5930.9194.72701forward

Expression of CNT30692309

Peptides detected in this lncRNA

>peptide 1 (53 aa)
IFLVNGIFERSGTQPSVACNSYLQQSNCKLASFSFHQKLTAPNEYAMKQVQNI*

>peptide 2 (49 aa)
MRQGTATRTHYLRTSLLPPKRRPDLASSSQEGRPVMRQMRRGSGMWLQR*

>peptide 3 (30 aa)
MMADECSTHRRSTGSHLSTLLPSGSPRRRR*

Sequence

>CNT30692309
TTATCTTTCTAGTCAATGGGATCTTTGAACGCAGTGGCACACAACCCTCTGTAGCTTGCAATTCATATCTGCAACAGAGCAACTGCAAGCTTGCATCCTT
CTCTTTTCATCAGAAACTTACAGCTCCAAATGAATATGCAATGAAACAAGTTCAGAATATTTAGTCTCTACCTATGTAGCGTGGCAAGAAAGCTCTGCTA
CATAAATTGATTTACTTTCTGTAGGACAGGGGAATAAGACTTAAGTACACATGCCAAGAATTACCATTGCTGAGAGGAGTTGCAACTGTACTTAGATCTA
AGTATCATCATACGCAAGTAAATGCATCCAGAACTTGCAGATCGAGGGAACAGTGCTACCGGATGAATCGTAGGATCAACCATCATTCAACAGAGACAGA
CAGAGATTAAAGCTTACTGTTGTGGCTCGATGATGGCGGATGAGTGCTCGACCCATCGGCGCTCCACGGGAAGCCACTTGAGCACCCTCCTGCCCAGCGG
CTCGCCGCGACGCCGCCGCTGATTCACCGATGCGGCAGGGGACTGCGACGCGGACGCACTACCTCCGGACCTCCCTGCTGCCCCCGAAGAGAAGGCCCGA
CCTCGCCTCCTCCAGCCAGGAGGGCAGGCCGGTGATGCGGCAGATGCGGCGTGGATCGGGGATGTGGCTGCAGCGTTGACGAGGGGGGAGGGTCGCCGCC
GCCGGCCGTCGCCGTGCCCGCCGCGCGCCGAGCTCCTCCGTAGGGCGGCGGATCCGGCCCTCCCGAGGACGGCGCCGCCGGATCCGCCGCCGCAGGCCGT
CGCCGAGCCCGCCGCCCGCCGCCGTCGGGGAAGGGAGGCCACCGCCGCGCATGGGAGGTCGGGGAACGAAGGCCGCCGCCGGTGCCGAGCGAGTCGCCGC
CGAGCCCGCCACGCCGCACAGCTCCCGTCGGTGAGAGAGAGAGAGAGAGAGGAGAGGAGGAAAGAGTGAGAGGCTGAGAGGAGAGGAGAGGAT