Detailed information on CNT30692288


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522081Oryza sativaSetaria italica48.5841.4594.17240forward
CNT30180108Oryza sativaSecale cereale43.9399.0991.71217forward
CNT30392320Oryza sativaTriticum turgidum39.689891.84196forward
CNT30439818Oryza sativaAegilops tauschii43.3271.5790.65214forward
CNT30249006Oryza sativaAvena sativa47.3726.991.88234forward
CNT30444735Oryza sativaSaccharum spontaneum47.3740.9895.73234forward
CNT30721558Oryza sativaTriticum spelta44.5398.2191.36220forward
CNT30341741Oryza sativaEragrostis tef44.5336.388.64220forward
CNT30361377Oryza sativaSorghum bicolor47.5720.8791.06235forward
CNT30596661Oryza sativaOryza meridionalis45.9563.4190.31227forward
CNT30369862Oryza sativaOryza glumipatula43.7298.18100216forward
CNT30106627Oryza sativaOryza longistaminata41.09100100203forward
CNT30102585Oryza sativaOryza rufipogon44.3362.2291.32219forward
CNT30575680Oryza sativaOryza barthii48.9997.19100242forward
CNT30116256Oryza sativaOryza nivara45.9510099.56227forward

Expression of CNT30692288

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLFSMRMQRKLLPTSPLSVHSTDSSGYSGLNGASFT*

>peptide 2 (41 aa)
CKHKQQPDRIIISAFFFSARSLVLVASLTIQKMAGKLSATL*

>peptide 3 (85 aa)
MRQLTPGDDLPALVVALAPLPERDGGAVADAAVVLVAVEGVEVEADVVQHADAAEALAHVAALRPQHRLVRVLRVERRQLHLKPPP

Sequence

>CNT30692288
TGCAAACATAAGCAACAACCAGATCGCATCATCATATCAGCCTTTTTCTTTTCGGCGAGATCATTAGTACTAGTAGCAAGTTTAACAATTCAAAAGATGG
CAGGTAAGCTATCGGCCACTCTATGACGTCCTTGTTGCTGTCGGTTACGTGAAATCAATGTGCAAAAATTTCTACTCCTCATCAAGAAAGTTGATAATGG
TGCTCGTAAACAAGTTGCAGCGAGCGATGTTGGGATGAGGCAGCTTACACCAGGGGACGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAG
CGCGACGGTGGTGCCGTCGCGGACGCCGCCGTGGTCCTTGTCGCCGTGGAGGGCGTCGAAGTTGAGGCGGATGTTGTTCAGCATGCGGATGCAGCGGAAG
CTCTTGCCCACGTCGCCGCTCTCCGTCCACAGCACCGACTCGTCCGGGTACTCCGGGTTGAACGGCGCCAGCTTCACCTGAAACCACCACCACC