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Detailed information on CNT30692282

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30595942	Oryza sativa	Oryza meridionalis	94.19	97.01	97.07	648	forward
CNT30369931	Oryza sativa	Oryza glumipatula	91.86	99.37	100	632	forward
CNT30100647	Oryza sativa	Oryza rufipogon	98.55	50.41	99.85	678	reverse complement
CNT30116064	Oryza sativa	Oryza nivara	88.81	93.43	100	611	forward

Expression of CNT30692282

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RPLLLVVSLPAPPSIASGLSNGEPGGRTHE*

>peptide 2 (37 aa)
MRGCEGRSRRRLRACVRSYRIYKAYRYGRRRRSIVRI*

>peptide 3 (37 aa)
KASSSSRLPPCSSFHCLRPLQWRTRRPHPRMTSPVIA*

Sequence

>CNT30692282
AAAGGCCTCTTCTTCTAGTCGTCTCCCTCCCTGCTCCTCCTTCCATTGCCTCCGGCCTCTCCAATGGCGAACCCGGCGGCCGCACCCACGAATGACTAGC
CCTGTCATTGCCTAGTCTCGGCCAATGTAGGTGTAAGAGGGTGCGGCCGCCGCCGCCGCCGCCACCAAAGGCAGACAGGATGGAGCCAGGCGTTACTTGT
AGTTGTACTACTGTCTACTACCAACGATGAGAGGATGCGAAGGGAGATCGAGAAGAAGGCTACGTGCGTGTGTGCGTTCGTACCGTATATACAAGGCGTA
TAGGTACGGCCGGAGGCGGCGGAGTATTGTACGGATCTAAAAGGTTCTTTGCTTGCCACCGCTCTCCGGGTCATTGGTGATGTTTTCAGTTAATTTTCCT
TTTCAGTAGTTTATATATTGTTGGGTGGAGGATATCTTTGAGCAAAGTCCTCTGAATTTTGAACCATTTTGCTAGTATTATTTTTGTTCCTTCTTCGAGT
TTTGGTTTTACGGAGAGATTTTTATGCCCCTGACTCTTCTCGTGTAAGTTTGCGAGCAGCGCTTGACTGCTGTTGTGGCTCGAGTAGTTTTAAGTCTATA
TATTGGGTTCTCCATGCTAAGCTTGAACTGCATCAAAAGGTTTATGCAATTATGCTAAACTTCTAGCATATGCTAATTAATTCTTTCC