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Detailed information on CNT30692230


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000299, E-value = 3e-144

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578527Oryza sativaOryza barthii55.3257.9197333forward

Expression of CNT30692230

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVRCSGLCYARGIVTTPFRGTVVVLRHMVT*

>peptide 2 (32 aa)
MMWGCVLWVQWYTSDQSKTIRITVPAVMGGSNN

>peptide 3 (42 aa)
MYCSCLFMCCFGDFALFCLDSDVSGESVFAGEEFEEFQGQQD*

Sequence

>CNT30692230
CGCAAACCCTAGCCTCTGACGCAATAATTCCCTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATC
CGATTTAATCTTTAAAAATTCATAACTAATTCAACTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAA
TATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGATTTTGCTCTTTTCTGCTTAGATTCCGACGTTTCCGGAGAGTCCGTTTTCGCAGGA
GAAGAATTTGAAGAGTTCCAAGGCCAGCAAGACTGAGAAGTGGCGGAGATAAGCCCACAGGGGTCGCTGGGGAGTCCATGCCTTGTTTATAAGGGGGTGA
TTATGATCCAGGAATGGTGCGCTGCAGTGGATTGTGTTATGCAAGGGGTATTGTCACAACTCCTTTCCGAGGTACCGTGGTGGTATTGAGGCACATGGTG
ACATGATGTGGGGCTGTGTCTTGTGGGTACAGTGGTACACCTCTGATCAGAGTAAAACTATTCGAATAACCGTGCCCGCGGTTATGGGCGGGTCTAACAA
TG