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Detailed information on CNT30692203


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596498Oryza sativaOryza meridionalis34.5370.0584.62676forward
CNT30370658Oryza sativaOryza glumipatula14.9144.7989.38292forward
CNT30100787Oryza sativaOryza rufipogon40.9181.82100801forward

Expression of CNT30692203

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRLASIKPVQRSRQALSSFFQFCLINFFL*

>peptide 2 (69 aa)
MARSIGDRATTPAATSIGDLLGCGGIHLQQHGVPRRCRPLWRRYHGINPSALPIYAEAAVASPWLTDRS*

>peptide 3 (29 aa)
MCVTSLIDSVDPSPTLPTCRLKFLHFGPF*

>peptide 4 (29 aa)
MPSNYCALKRKRNISPAGTCSVSFSLLYS*

>peptide 5 (94 aa)
MKYDVDRMIKPLMNAFVWCMHMRDTSIVGIDGADNRTLQHVRSSGDGAESVIPLIQRIRSSSVPELKEVRGDQGEARPLVLGLSLSSSSSWLGE*

Sequence

>CNT30692203
TGATCAGTAGCCACCCACGATCAACCCTGTTACCGGATGCACTCACCGGACCCGTTTCCATTTCTTTAAAGAATATTCTCCTATAATGTTTAATTATCCC
GCACTAATTGGTCGGTTCTGAACAGATCGTATAAATCCCTTGGTTCCCATCCCATCCGCGACGGCAATCTCTCCGTTGTATTCGGATCGAGCGCTAGCTA
CCGGCGACTCGAAGCGGAGGTATGGCACGATCCATTGGGGATCGAGCAACCACGCCGGCGGCAACATCCATCGGTGATTTGCTGGGATGCGGCGGCATTC
ATCTGCAGCAACACGGCGTTCCTAGGCGGTGCCGGCCCTTGTGGCGACGGTATCACGGCATCAATCCATCGGCTCTTCCTATCTACGCGGAGGCGGCGGT
GGCTTCACCTTGGCTGACCGATCGAAGCTAGCACCGGTGACCTTAACAAGGACGCCATCAATATTTCGGCAAGCCACTGTGGTCATGCGGCTGGCATCGA
TCAAGCCCGTGCAACGATCAAGGCAAGCCCTTTCTTCCTTCTTCCAGTTTTGTTTGATTAATTTTTTCCTATAGAACGATAATACATACTCTTCCTTTTC
CTTTTTCTATTGGGTATATCTCTGTTATTGTTTGCAGACGAGGATGCAGACATGAAGTATGACGTTGATAGAATGATTAAGCCTCTGATGAATGCATTTG
TTTGGTGCATGCACATGCGAGACACATCTATCGTGGGCATAGATGGTGCTGACAACAGGACACTCCAGCATGTACGGTCGTCTGGCGACGGTGCTGAGTC
CGTGATTCCGTTGATCCAGAGGATAAGGAGCTCGTCGGTGCCAGAGCTCAAAGAGGTGCGAGGAGACCAGGGCGAGGCCAGGCCATTGGTGCTGGGTTTG
AGCTTAAGCTCAAGCTCATCGTGGTTGGGGGAATGAAAGAGAGCCCCACGTCTATTTTTGATTTTTTTTTTGGTGATTGAACTTTCACGTGGATGACACG
TCAATGAAAACTGTCCTTGAAAAACAGTCAGGAGAGTTGTTTTGCACGGTTTTAATATTTAAAGGGTTACAGTATACCTGACCTTTTTAGTTAAGGAATA
CTAACCAAATTCGACCACTACTAAGGGAGTTAAGTTAGACTTTTTCCATTCACATTAGGCTTGGAGACCAATGGGCTCACCAATACCATGTCACGCTCGG
TAGGATGATATTCTTCTTTTTTTGGATTGTATGGGTGACACATCTGCAAACAACAAAAGCCAACTAGTGTTTTGAGTTCAAAATGGACTGTTGGAACAAA
ATATTCCTATCTTTTATTCTACTATAAATAAAAAGAATCAACAATGCAATAGTTCATTCATCGTCCAACATGCCGTCCAATTACTGTGCCTTGAAAAGAA
AAAGGAACATTTCACCAGCAGGCACCTGTTCGGTGTCATTTTCTTTACTTTACAGCTAACCAACCGTGTCGGTCCGGATAGCTAAGGCACATTCCGCTCT
TCTGCACACATTTCGCCGAGCAACTCCTAGCATGGTTAATTTAACCGTACACACCACCGACGTACGATCTGTTGTAGCTCGACGTTAGCTCGCTGGCGGA
ATCGCAGCTCGCGTACAGCGTTTGACGACGACGCGGTAACTCGACATCTAGCTAATTAAGCTACTTAGCTCTCTCGCTAGCCAGTAATCACGTGTGGTGG
TGATGCTTTGGGTCACCGGCCACAATATATATATGTATGAATCAACTGCTGCTCCAAGCGCATGTGTGTCACGTCGTTGATTGATTCGGTCGACCCGTCC
CCCACCCTGCCGACCTGCAGGCTGAAATTTTTACATTTTGGTCCTTTTTGAAAACTTATTTTATAAACAGACCTCTGGAAAAACTTAAACCGAAAATGGT
CCTTTTTGGGCCGCCAGAGTGGCTGGCGCTGTACCCCAACATGGCGGCGCCAGCCACA