Detailed information on CNT30692184


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100600Oryza sativaOryza rufipogon43.812.5999.54219forward
CNT30116369Oryza sativaOryza nivara48.221.8199.17241forward

Expression of CNT30692184

Peptides detected in this lncRNA

>peptide 1 (38 aa)
PFLLSLSLTLLCLWAGQRRGEAGEEVQQLATWRRRRRP*

>peptide 2 (67 aa)
LSPLSLSHSSLPLGRPAPGRGGGGGPAAGDVAAAAASLACAASTAPTPSRTTTTAAAGIHCGRHQGH*

>peptide 3 (33 aa)
MRLSMFGCRDPVWFLIGACVEGGCTQLVFFFRL*

>peptide 4 (73 aa)
PFSSLSLSLFSASGQASAGARRGRRSSSWRRGGGGGVPSLCSFNRADAVTDDDDGSSWNSLWTPSGSLRLEQP*

Sequence

>CNT30692184
CCCTTTCTCCTCTCTCTCTCTCTCACTCTTCTCTGCCTCTGGGCAGGCCAGCGCCGGGGCGAGGCGGGGGAGGAGGTCCAGCAGCTGGCGACGTGGCGGC
GGCGGCGGCGTCCCTAGCCTGTGCAGCTTCAACCGCGCCGACGCCGTCACGGACGACGACGACGGCAGCAGCTGGAATTCACTGTGGACGCCATCAGGGT
CACTGAGATTGGAACAGCCGTGAAACCTCTGCGGAAGCATGTTTCAAAGCAGATTCGACAACTCGTACGATCGCTCATTGACAACGACCTAGCCACCACA
AGATGTTGGGTTGACGGGCCTTGCGGTGGAGAGCGGATCCATTATTCCTTCTCGCCCACTCTCTCCCTCTAACCTAAAGACATGGATGAGGTTGAGTATG
TTTGGTTGTCGTGACCCTGTCTGGTTCTTGATAGGTGCTTGTGTTGAAGGTGGTTGCACGCAACTTGTGTTCTTTTTCCGATTATAGCCTTTAAAGTCTA