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Detailed information on CNT30692142


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670586Oryza sativaSetaria viridis12.234384.8886forward
CNT30553142Oryza sativaOryza glaberrima13.833.5610097forward
CNT30446079Oryza sativaSaccharum spontaneum21.9117.0587.66154forward
CNT30343300Oryza sativaEragrostis tef23.0442.5288.89162forward
CNT30595937Oryza sativaOryza meridionalis13.823.1510097forward

Expression of CNT30692142

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKYKYDHLRILKLCQHQKCMRPPYHSCPNLERLFLDLTKVGRIAD

>peptide 2 (36 aa)
MEKKLALAMKSNLPDQLLDMILFGFSGRISPMLLQA*

>peptide 3 (52 aa)
VVTSIQVIHVLLNSETTKQKLHIQIFPGCRRKPPQVNWQLHPSIINISTSTR*

Sequence

>CNT30692142
AGTTGTTACCTCCATACAAGTGATACATGTGCTTTTAAATAGTGAAACTACCAAACAGAAACTCCATATTCAGATTTTTCCTGGCTGCAGAAGGAAACCG
CCTCAGGTCAATTGGCAACTTCATCCTTCCATAATCAATATATCTACATCTACAAGATAGTTTCACGCATCATAACAGAAAATGGAAAAAAAATTGGCAC
TTGCCATGAAGAGTAACCTTCCAGACCAACTGTTAGATATGATATTATTTGGCTTCTCCGGTAGAATTAGCCCAATGTTGCTTCAAGCCTAACGCCTGCA
CGTTGATGTCTAGATGCATCCACAGGACAGCCTACAAGTCGCTATGAGCGAAATGGGCTTCACCATTTCACATTTTGTTTGATGCCATAAATTTGCCTTT
TCTCTCAGCAGGTTTAAGAATTTGAAAAGAACACATCAAAGTTTCATCAACACTCATCATTGCACCTGCATTATCAAATTCACCACAATAGTTTGGAGCT
GAGAATATGGTGACAAGTTGTCTGTCGGCAAAGAACTCATATCCATCCTCAACAACCTGACATCACATGAAATATAAATATGATCACCTCAGAATTCTGA
AACTTTGTCAGCACCAAAAGTGTATGAGACCCCCCTATCATTCATGCCCCAACCTTGAACGTCTTTTCCTGGATCTGACCAAAGTAGGTCGCATAGCAGA
CCT