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Detailed information on CNT30692117


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671891Oryza sativaSetaria viridis8.854084100forward
CNT30369827Oryza sativaOryza glumipatula23.8910099.26270forward
CNT30148524Oryza sativaBrachypodium distachyon7.1736.3283.9581forward
CNT30593990Oryza sativaEragrostis curvula6.6426.686.6775forward

Expression of CNT30692117

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFKEKFLLDDTMCCVYRHDIKQTGYTNKHCGIR*

>peptide 2 (35 aa)
MAVYQNSQIMIRKLKTKWKIKDALKQNDQGYKAIY*

>peptide 3 (48 aa)
MIYNRTQRPCTQSSSDTFRTKWIDNIIIMQHSLIKAVSQYHDPKLDRK*

Sequence

>CNT30692117
GTGGTAGTAGTATATGGCTGTATATCAAAACAGCCAGATCATGATCAGAAAATTGAAAACAAAATGGAAAATTAAGGATGCTCTAAAACAAAATGATCAA
GGCTATAAAGCCATATACTGACCATGATCTATAACCGAACACAACGACCCTGCACCCAGTCATCTTCAGATACTTTCAGGACAAAATGGATCGATAACAT
AATAATTATGCAGCATTCATTGATAAAAGCAGTATCACAGTACCATGATCCAAAACTTGACAGGAAATAGAAACATCCAGACGCAGCACAATCCAAGGAT
GACAACCGGTTCTTAACTATTGTAAAACAAAGTGCATCAATCATAAGAGCCTTAGTCGGCTTGGCCAAGAGGTCGGTGTACTCCTGGAATGGAGACTTGA
CGAACTTGGTGTCCCTCCAGAAGTCAGGAGTAAGGAATCCATAAGTCTTCATCAGGCAGTCAAAGGTGGCCTGCACAAAACAGATCATTTGGTTTTAATA
GAGGATAAACTTACCACTAAGAATACATCAATCAAGCAAGGCAAACTAATAAGAAGGCCTCAAGCCATCACAGAGTATATATAACACAATCAAACCAAAG
TAAAAACGACTGGGTGTAGAAGACATGAAAACATATTACATATTAGATATTAACACTCCCTGTTTGAGTAGGACTTGATGGCATCAATGTGCAAACAGGG
CATACGAAATGTTTAAAGAAAAGTTTCTATTAGATGATACAATGTGCTGTGTGTATAGGCACGATATCAAGCAGACAGGATACACTAATAAGCACTGTGG
CATAAGGTAATGACCAATGCACAAAAAGATTAAAGATCAAACAATTACAGCAGCAGCGTAAGTGTCAATAATCAAATAGACCCATGAAATGGTTCATTGA
CAGCAGACAATAGTAAATCCATACTGATGGGCAGTAAGCCTGTAACAAAGTAAAATATTTTGAACCCAACCAGTTTAACTGTATCGAATTAGATGAGTAG
AATACTATGAATCACCTTCAAAGATGCATGTGTATGTACACTAAGAACAGTAGTCTCATTGAACAATTGATGCTAATATACAAACTGTGATATAGTGAGA
AACTATAGCATAATGCAGTTATATTCCACC