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Detailed information on CNT30692054


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30364710Oryza sativaSorghum bicolor31.5160.3779.35489forward
CNT30100814Oryza sativaOryza rufipogon46.1377.57100716forward

Expression of CNT30692054

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPTSSPAALLIGGPPEPLSVSLHASSLEPSVSQP*

>peptide 2 (59 aa)
MICGSRRSSTAASFASDDLPPETWLSDSSSWLSSDLANSNSASASAVFPSLRNLSALRL*

>peptide 3 (60 aa)
MHVSLHSALLSVKRIIGHQHLFVYTENDLEERPHGSQVLSLSASNPTPPPPSSSADCAFF*

>peptide 4 (69 aa)
MLSEAELALFLVLEGQRKCHRYSSWHWQIVGSSWSLAQRVSLIHPYHLHCSLERLQDVFLRVLPVSILL*

>peptide 5 (34 aa)
MSSVQLLALADCWIKLVSCTTGFIDSSLPFALFS*

Sequence

>CNT30692054
CTCGAAATAGAACCTCTGACAGCTTTGTTAATTATCCTGTGATCCTGTCACGTCGCCACAGAAATGCGATGCTCCATTAATAGTACAAACAAATACAGTA
ACTTACAGACAAATTACTCAAAACTATAGTACTATCCTCCTGAGCATGCGTTGATCTCAGACAGAATCGGCAGGTTGAAGTATGGGACATGAAGAATTCA
AGATACCGAATGCAAATGAAATCCACTGTCAGGTGAACTAAATAATGTTCAGAAGATACAATATTTCTTACAATGAATGAATGCACGTATCACTGCACTC
TGCACTCCTATCCGTGAAAAGAATCATTGGTCATCAGCATTTATTTGTATATACAGAAAATGACCTTGAAGAGCGTCCTCACGGCTCACAAGTCTTGAGC
CTATCTGCTTCCAACCCAACCCCCCCCCCCCCCTCCTCCTCTGCCGATTGTGCTTTTTTCTAACTGAAACATCAGTCTTCAGAAGTTATCAAACGATTAT
GAAGACGAGCTTTTGGACAACTTATTAGGCAAGTGATGCCAACTTCTTCTCCAGCCGCTTTGCTGATCGGAGGGCCTCCAGAGCCTCTGTCTGTTTCCCT
TCACGCTTCAAGTTTAGAGCCTTCAGTTTCTCAGCCTTAATATGTTCCTCAAGCTGGGTCTTCTCACTCTGAGGCTTGGTTGTAGCTGCCACAGTTGGCT
TTGCCTCAGCTTTCTTTGAAGGCTGTGCGTTAGAAGATTGCGCGGACAGATCAGCATCACTCCAACCAATCGATTTTAAGGCAGACATGATCTGCGGATC
AAGAAGATCCTCCACAGCTGCATCGTTTGCGTCAGACGACTTGCCTCCAGAAACCTGGCTTTCTGATTCTTCCAGTTGGCTCTCCAGTGACTTAGCCAAC
TCGAATTCCGCATCTGCTTCTGCGGTCTTTCCTTCTCTCCGCAACTTGAGCGCATTGCGTTTGTGAGCAAGGGATTCACGTTGGATTTTGAGACGGTCTC
GACTAGACAATGCTTTCGGAGGCTGAACTGGCTTTATTTCTTGTGCTGGAGGGGCAGAGGAAATGTCATCGGTACAGCTCTTGGCACTGGCAGATTGTTG
GATCAAGTTGGTCTCTTGCACAACGGGTTTCATTGATTCATCCCTACCATTTGCACTGTTCTCTTGAGAGACTTCAAGACGTTTTTCTAAGAGTTTTGCC
TGTTTCAATTCTTCTCTAGCTTCTGCCATTTTACCTTCCCTCTTAAAAGCAACTGCTTTTCTCTTATGATGTAAGATTTCATCTTTGAGAGTGTCATGTC
CGTGCGGAATCTGAGGTGAATGCAATCTTTCTGCTGTTACCAGCGGATCAGTAAAGGATGGCCGGGACAAGGTTGAACGTGTTCCTTCAGAATGAACTTT
TGATGCATGATCTGGTTTAGGAATGATTAGTTCGGTCGGTGGTATGCTTTGGGAACTAGCTTGAGCATCCAGAGATGCAGCAAGTTCAGCAGCATGCACT
GGCAACGAAATAACTCCCTCCGTTGCATTTCTTAGTTTAGGCAGGTGTGCAC