Detailed information on CNT30692005


BLAST search results

BLAST vs Swiss-Prot:
sp|P27788|FER3_MAIZE, E-value = 4e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30448124Oryza sativaSaccharum spontaneum80.3750.4585.6389forward
CNT30137412Oryza sativaLolium perenne25.2128.8482.79122forward
CNT302216Oryza sativaZea mays46.0780.2286.1223forward
CNT30361595Oryza sativaSorghum bicolor32.0229.0387.74155forward
CNT30369772Oryza sativaOryza glumipatula65.9152.6499.69319forward
CNT30100889Oryza sativaOryza rufipogon46.945.1399.56227forward

Expression of CNT30692005

Peptides detected in this lncRNA

>peptide 1 (34 aa)
VKVSFLVSMDDAVGLRVGDTCQHIAFFLLRIIKE*

>peptide 2 (36 aa)
MLQHGMSREALLQRSRRHQGCRCHPEPRTRALALLV*

>peptide 3 (31 aa)
MSAHSLLPAAHHQGMIHPTGRRSQPRSYRHR*

Sequence

>CNT30692005
TAGTAAAGGTCTCCTTCCTTGTGAGTATGGATGACGCAGTCGGACTTAGGGTAGGAGACACATGTCAGCACATAGCCTTCTTCCTGCTGCGCATCATCAA
GGAATGATCCATCCGACTGGTCGACGGAGCCAGCCTCGATCTTACCGGCACAGGTAGAGCATGCTCCAGCACGGCATGAGTAGGGAAGCTCTACTCCAGC
GGTCTCGGCGGCATCAAGGATGTAGGTGTCATCCGGAGCCTCGAACTCGTGCTCTTGCCCTTCTGGTGTGATGAGCTTAACCTTGTAGGTAGCCATTGCC
GAGACGTCAAGCTTCTTGGAGGAGGCCTTCAGGCTTGGAAACTGCATGCCTTGGCTGAAGAAGCTTAGAGATGCCGGGCTCTTGACCGCCGCCACCTTGG
AGGCCTGAGTTCTAGCATTGCTCAAGGACACACATGAAGTTGCAAGTGTGCACGTCGCCATCTTGAAACCTAGAATTGTTCAAA