CANTATAdb - search

Detailed information on CNT30691965

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003370, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30595887	Oryza sativa	Oryza meridionalis	83.76	100	99.3	428	forward
CNT30603841	Oryza sativa	Oryza punctata	77.5	80.16	94.7	396	forward

Expression of CNT30691965

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MYSCTFLSPSLVSHLVCTLVLLLSITQCG*

>peptide 2 (38 aa)
MDVLMYISFSLPRFASCLYTSFVIINHTVWLKIKQALAT

>peptide 3 (44 aa)
MAPPPLLRAEMVTDQQQAGDTCPGVGRSRRGLCRQPCTQSPRCS*

>peptide 4 (62 aa)
MTNHGATSAAPCRDGHGSAASRRHMPRRGQIKARIVSAAVHSVASVLLKALHSSHILVRNPF*

Sequence

>CNT30691965
AGACAGCCCAAAAGCTGAGAGAGAGCACGCATCCAAAGTTCCAAACTAGTCTGCAGCTGCTGTTCGTGTGCATATCCAGTGAGTGAAGTGCAGGAAGATG
ACCAACCATGGCGCCACCTCCGCTGCTCCGTGCAGAGATGGTCACGGATCAGCAGCAAGCAGGAGACACATGCCCAGGCGTGGGCAGATCAAGGCGAGGA
TTGTGTCGGCAGCCGTGCACTCAGTCGCCTCGGTGCTCTTGAAAGCCCTCCACAGCAGCCACATCCTGGTCAGAAACCCCTTCTGATGGAGCTATCAGCT
AGTATACCGAAATTAGGCGAGTTACCTGTTCGGCTGTACCTGGAATCAGCTGGTTTTCAAGTGTAAGCATGGTTCAGAAAGTGATAGCCTAGATGGATGT
ACTCATGTACATTTCTTTCTCCCTCCCTCGTTTCGCATCTTGTTTGTACACTAGTTTTGTTATTATCAATCACACAGTGTGGTTAAAGATTAAGCAAGCT
CTTGCTACTCC