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Detailed information on CNT30691950


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672814Oryza sativaSetaria viridis44.0665.192.65694forward
CNT30639730Oryza sativaNymphaea colorata37.964.9685.59597forward
CNT30535563Oryza sativaEucalyptus grandis50.3597.1885.88793forward
CNT30316757Oryza sativaCorylus avellana46.7961.5286.02737forward
CNT30546799Oryza sativaIpomoea triloba56.0671.9187.2883forward
CNT30518094Oryza sativaJuglans regia55.8794.0285.23880forward
CNT30371709Oryza sativaArabidopsis thaliana40.799.5387.99641forward
CNT30274113Oryza sativaChenopodium quinoa29.0873.484.93458forward
CNT3021028Oryza sativaCitrullus lanatus53.2767.5583.79839forward
CNT30727590Oryza sativaCorchorus capsularis55.364.2887.26871forward
CNT30380230Oryza sativaManihot esculenta55.7536.1985.31878forward
CNT30525464Oryza sativaPhaseolus vulgaris37.02103.1982.85583forward
CNT30629525Oryza sativaVigna unguiculata24.5189.7786.27386forward
CNT30194937Oryza sativaPisum sativum55.9488.1983.77881forward
CNT30712097Oryza sativaGlycine max27.0535.7185.21426forward
CNT30160120Oryza sativaPistacia vera56.1971.287.57885forward
CNT30121467Oryza sativaPhyscomitrium patens29.2169.3883.7460forward
CNT30287202Oryza sativaTriticum aestivum30.2966.3489.52477forward
CNT30564256Oryza sativaActinidia chinensis38.6752.3287.19609forward
CNT3084148Oryza sativaVigna radiata36.8935.6785.03581forward
CNT30541591Oryza sativaBrassica napus56.1375.1785.97884forward
CNT30233904Oryza sativaBrassica oleracea56.1396.486.09884forward
CNT30173274Oryza sativaTrifolium pratense53.2162.385.32838forward
CNT30146334Oryza sativaMedicago truncatula39.4362.4784.7621forward
CNT30440472Oryza sativaAegilops tauschii21.0255.6392.75331forward
CNT30246955Oryza sativaAvena sativa56.750.5990.15893forward
CNT30665783Oryza sativaTriticum dicoccoides53.492.3287.87841forward
CNT30310177Oryza sativaCamelina sativa55.6275.5286.76876forward
CNT3059230Oryza sativaArabidopsis lyrata55.7573.0487.02878forward
CNT3077042Oryza sativaBrassica juncea55.8173.0186.8879forward
CNT30614135Oryza sativaArabis alpina47.8148.2786.32753forward
CNT30598511Oryza sativaFraxinus excelsior30.5473.8985.03481forward
CNT30449495Oryza sativaSaccharum spontaneum55.8772.3191.02880forward
CNT3011166Oryza sativaZea mays55.8762.2390880forward
CNT30608730Oryza sativaGossypium raimondii28.4474.6784.6448forward
CNT30647369Oryza sativaRosa chinensis26.6746.3684.05420forward
CNT30685098Oryza sativaTriticum urartu34.0336.4691.42536forward
CNT30721807Oryza sativaTriticum spelta18.3532.1587.89289forward
CNT30350898Oryza sativaEragrostis tef55.8178.992.83879forward
CNT30480841Oryza sativaArabidopsis halleri25.2163.9388.16397forward
CNT30368495Oryza sativaSorghum bicolor46.2971.5491.08729forward
CNT30355521Oryza sativaLactuca sativa43.9472.5485.55692forward
CNT30427598Oryza sativaPapaver somniferum55.363.6784.73871forward
CNT30706337Oryza sativaPrunus avium53.0271.6185.39835forward
CNT3024428Oryza sativaPopulus trichocarpa40.3283.2283.78635forward
CNT3037774Oryza sativaCucumis melo29.8460.885.74470forward
CNT30148140Oryza sativaBrachypodium distachyon23.7598.4292.78374forward
CNT30580076Oryza sativaEchinochloa crusgalli26.2231.2291.28413forward
CNT30496962Oryza sativaDigitaria exilis55.8778.2991.48880forward
CNT30176122Oryza sativaVigna angularis55.0576.5983.39867forward
CNT30113122Oryza sativaFicus carica31.0558.9285.89489forward
CNT30724026Oryza sativaLupinus angustifolius53.2758.2685.58839forward
CNT3050294Oryza sativaCucumis sativus30.2277.6584.66476forward

Expression of CNT30691950

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMITWEVKLAASLAGSSLELEATYPRFRSFTATFFTLNPTLSPGRASWRASWCISTDLTSVVRPLGPKVTTIPGLRTPVSTRPTGTVPIPPILYTS*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIILTIPASPFFKNLGSFSSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

>peptide 3 (58 aa)
MRLPSRFHRNGPWSTWEWWHPSVTEQRKTNQGQAPAYKYITNYKWYETYYKHHIRYKK*

>peptide 4 (32 aa)
MVNCSLRCIEGRQSEKLAQRDKSIKENATSLM*

Sequence

>CNT30691950
ACCGAACAGAAATAAACGAGTATTAAACGACTGACATAGTGCACATTGCGAGCAGATATTAACGGTCCATGAAACGAGAGCCATGGCCGTGGGCAAAACT
TAACAAATACTAGAACTAGATATCTCAACTGCAGACATGCAAACCACCATTTGAACGAGGCTCACTTCTTCTTGGCGGCAGCCTTGGTCACCTTGGCACC
GGTTGGGTCCTTCTTCTCCACGTTCTTGATGACGCCAACAGCCACCGTTTGCCTCATGTCACGCACCGCAAAACGACCAAGAGGAGGGTACTCAGAGAAG
GTCTCCACAACCATGGGCTTGGTAGGAATCATCTTGACCATACCAGCATCACCGTTCTTCAAGAACTTGGGCTCCTTCTCCAGCTCCTTGCCAGATCGTC
TGTCAATCTTGGTCACCAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGGCCAGGGTGGTT
CATGATGATCACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACGTACCCACGCTTCAGATCCTTCACCGCAACG
TTCTTCACGTTGAACCCGACGTTGTCACCAGGAAGAGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACCGACTTGACCTCAGTGGTCAGGCCGCTGGGAC
CAAAGGTCACCACCATACCAGGCTTGAGGACTCCAGTCTCAACACGACCCACAGGCACGGTGCCAATACCACCGATCTTGTACACGTCCTGAAGGGGAAG
ACGCAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAAGGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCA
ATCATGTTGTCACCCTCAAACCCAGAGATGGGAACGAAGGGAATCTTGTCAGGGTTGTAGCCGACCTTCTTCAGGTAGGATGAGACTTCCTTCACGATTT
CATCGTAACGGGCCTTGGAGTACTTGGGAGTGGTGGCATCCATCTGTAACAGAACAAAGGAAAACAAATCAGGGGCAGGCACCAGCATACAAATACATTA
CTAACTACAAATGGTATGAAACATATTATAAACACCATATAAGATACAAAAAATGAAATAATAGCAACCAATATGTAATGAAATACAGGTGGACAGCAAC
ATCAATACAAGTCTAGTATAAAGTAACATACAGCACGATATCTAAATGAACTTAACCAAATCTAACAGAAGATATGTATAGTTTCTTGCAGCAGTAAATT
ACTAAAGCTAGTAGTAGCAGGAAAGCAACCAACAACAATTGCAATCTTAGATGCATCATAAAGACAGACAGTCATAACAAAAGCAACAATCAACAGTAGC
AGCCTTAGATGCATGGTAAATTGCAGTCTTAGATGCATAGAAGGTAGACAGTCAGAAAAACTAGCACAGAGGGATAAATCAATAAAAGAAAATGCTACTT
CATTGATGTAATCAACAAATATCTGGAATAGCATCACGAATATGTTCATTTCCAATTTCCAACTGAATATAGCAG