Detailed information on CNT30691771


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003925, E-value = 9e-137

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553176Oryza sativaOryza glaberrima84.1193.88100307forward
CNT30100725Oryza sativaOryza rufipogon10087.11100365forward
CNT30550751Oryza sativaOryza brachyantha16.9924.3187.162forward

Expression of CNT30691771

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TVPKKCNNCILTEGMGWHIYTVPYNNHLQASLARSKHKNEWA*

Sequence

>CNT30691771
GACAGTACCTAAAAAATGCAACAATTGTATATTGACAGAAGGAATGGGCTGGCATATTTACACTGTTCCATACAATAACCATTTGCAGGCTAGCTTAGCC
AGGAGCAAGCACAAGAATGAATGGGCATAGCTGCGATTTCTCCCTAGAGAAACTAAATTGCAGGTTAGCCAGGAGCTAACGCATGCATGACAAAAAGACC
AGAAGACTCTTACAAGACCAAGAGATAGGGTTTGCAGGTTAGCGAGGCGCTAACGCGGTGCATATGTGCACTTCACGACCTTATTTCTTTTCTCGTTTAA
ATTTGGGGGAGGTGAGGTCAATTAGGTGTTGACCTGGATTTCCCCCAGAGAGTATGGACAGTCTG