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Detailed information on CNT30691718


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y0F2|NRX12_ORYSJ, E-value = 6e-140

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30252286Oryza sativaAvena sativa20.7438.2784.52168forward
CNT30100808Oryza sativaOryza rufipogon28.5245.92100231forward

Expression of CNT30691718

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MASQGMSAKLSLNDSSSPSNDTITTSNFSPTALSFSYILASTEVN*

>peptide 2 (56 aa)
MLINYVSNIVIQCLPIRTNQDKHRKATELKITSQLLTHLISLRNGKPRHVCKTLIE*

>peptide 3 (57 aa)
MNSLIIFSCLFLFLQFIDPLCCKRVSFCTILMHKLHSIFSVNFTRFCIKDYKVWNTHH

Sequence

>CNT30691718
AGGCAGGAAGGCTCGGCATGGAGGGCACCATTTAGCTGAAAAGTAGAGGAGGACAGTCTTCCCAACAAGTTCTGATACAGGAACCTTTGCCCCATCTTTC
CCAAGGACAAAGTCCAAATCACCAGTGACCAGAAGGGACTCCAGGGTCTGTGATTCTGCTTTAGCTTTTGCCTTCTCAGCAAGAATTTCGAGCTTCTCTG
CACTGAAAGGAAAACCTTCCCATGCATCTGGACCATGCTCATCAATTATGTCAGCAATATCGTCATTCAGTGTCTTCCCATCAGGACCAATCAGGACAAG
CATAGGAAGGCCACTGAGCTCAAAATAACGAGCCAGCTTCTCACACATCTTATCTCCCTGAGGAATGGCAAGCCAAGGCATGTCTGCAAAACTCTCATTG
AATGATTCCTCATCACCGTCCAATGATACCATTACAACTTCAAACTTCTCCCCAACTGCTTTAAGTTTTTCATATATTTTGGCAAGCACTGAGGTGAATT
GAACAACTGGACCATAGCCATTCACCACAAAGCACAAACCAACATACTTGCCTTCGAGGTCAGAGATGGGCACCTGGTTACCTTGTCTCCCTTGTTGGTG
ATTAAGTAGTCGCGGGTGGGTGTACCAAACAGACTATGAATAGTTTGATTATCTTTAGCTGCCTTTTCCTGTTCCTTCAATTCATTGATCCTCTCTGTTG
TAAAAGGGTAAGCTTCTGTACCATACTCATGCACAAGCTCCACTCCATCTTCAGTGTAAATTTCACCAGATTTTGCATCAAGGATTACAAGGTGTGGAAT
ACCCATCACC