« Back to Oryza sativa search


Detailed information on CNT30691617


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 2e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30365845Oryza sativaSorghum bicolor30.2546.688.58219forward
CNT30595677Oryza sativaOryza meridionalis65.6176.9992.42475forward
CNT30369534Oryza sativaOryza glumipatula60.9172.1897.73441forward

Expression of CNT30691617

Peptides detected in this lncRNA

>peptide 1 (51 aa)
LKLQTKALLEVGTGTQASTGPYNKCARTDSGNKSTTKKTKERVQRESKLVP*

>peptide 2 (35 aa)
MHDRSCVALHAKYVRNVVANKQSSKQIKSRVVKAN*

>peptide 3 (98 aa)
MLPLMAVQRHTAASRSTSPSSSGQHGSAGGTPTLALIRPSTLAHTPSFSASRGHLPNADGVGVGVDGVGVHGQEQSERLGRHCYVPEIDRSQAQLITS*

Sequence

>CNT30691617
TCTGAAGTTGCAAACCAAAGCTTTATTAGAAGTTGGTACCGGCACACAAGCTAGCACCGGCCCTTACAACAAATGCGCACGTACGGATAGCGGGAATAAG
AGTACTACAAAGAAGACAAAGGAGAGAGTACAGAGAGAATCCAAACTGGTACCGTGATACGTACAAACAGCCAGCATGCACGATCGATCATGCGTTGCGT
TGCATGCAAAGTACGTACGTAACGTAGTAGCAAATAAACAGAGCAGCAAGCAAATCAAATCAAGAGTCGTCAAAGCCAACTAATCACCGTACGTAGGATC
AACCCATGCAGGCATTGCATATGCACGCTGCTTAGCACTTGAAGCCGGTGGGGACGGTCTTGCCGCAGTAGTTGAGGTTGATTCCGAGGATGTTGCCCCT
GATGGCCGTGCAGAGGCACACCGCCGCCTCGAGGTCGACGAGCCCCTCCAGCAGCGGGCAGCACGGCTCCGCCGGAGGCACGCCCACCTTGGCCTTGATC
AGGCCCAGCACGTTGGCGCACACGCCCAGCTTCAGCGCGTCGCGGGGGCACCTCCCGAACGCCGACGGCGTCGGCGTCGGCGTTGACGGTGTCGGGGTTC
ACGGCCAGGAACAGAGCGAACGCCTTGGACGCCATTGCTACGTACCCGAGATCGATCGATCACAAGCGCAGCTAATCACTAGCTAGCTAATTAAGAGCTC
TTGATCAGCTGGAGATGATTAGGC