Detailed information on CNT30691495


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552873Oryza sativaOryza glaberrima64.3889.7197.811325forward
CNT30595765Oryza sativaOryza meridionalis40.1467.4897.82826forward
CNT30369691Oryza sativaOryza glumipatula56.4186.7799.221161forward
CNT30575108Oryza sativaOryza barthii80.2798.3997.341652forward
CNT30603681Oryza sativaOryza punctata29.7442.7789.05612forward

Expression of CNT30691495

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFVTLRLQGCNSLTIDCRTDHIKTAAKMVQNRVLC*

>peptide 2 (29 aa)
MFTFGRKKMCMTVLKQMKNSSFYEVNFCC*

>peptide 3 (73 aa)
RLHIAALIDRWIDGSRPAQISLRLYSAGSNMCRGFCFASTATCRATGTRARARPRAVLTPRPPPRSGARSSPF*

>peptide 4 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGMVTSLWQQLHILQENL*

>peptide 5 (85 aa)
MDRGQLRYLFASTPPGATCVAAFASLPRPHAAPRAPARARARAPSSRRVRRPDPAHAPPPFEPPSPAPPRATARRSRTDLVNSPP*

>peptide 6 (74 aa)
MKIVPSVLIMKAAHVNCLVHPDHLLLFTLIRLRRLYIVYWLPLLNVSLITHDMLAWKGNFELIMRPVTILSSEL*

>peptide 7 (92 aa)
PTYRGINRSMDRWIAASSDISSPLLRREQHVSRLLLRFHGHMPRHGHPRARAPARRPHAASAAQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

Sequence

>CNT30691495
CGCCTACATATCGCGGCATTAATAGATCGATGGATCGATGGATCGCGGCCAGCTCAGATATCTCTTCGCCTCTACTCCGCCGGGAGCAACATGTGTCGCG
GCTTTTGCTTCGCTTCCACGGCCACATGCCGCGCCACGGGCACCCGCGCGCGCGCGCGCCCGCGCGCCGTCCTCACGCCGCGTCCGCCGCCCAGATCCGG
CGCACGCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACT
CTCCCGGCCCCGGCCCCAGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTG
GTTTCTCAGATTCATGCAAGGGGATGGTGACAAGCTTGTGGCAGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTT
TCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACA
AGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAAC
AGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAATTGCAAATGAACTCATCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAG
GTGCTAGATGAGTAAAGTCTGGTAAGGAAGTCAAACATCTAATATGTATGAAAATTGTTCCTAGTGTTCTTATAATGAAGGCTGCACATGTAAACTGTTT
AGTCCATCCTGATCATCTATTGTTGTTTACTCTGATCAGATTACGTCGTCTCTACATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCAT
GACATGCTTGCTTGGAAGGGCAATTTTGAGTTGATCATGAGGCCAGTCACAATTCTTAGTAGTGAATTATGAATTTCTAAATGCATTATGTTAGTTTCAT
GGCTTGATCCTTGGTTTCTTTGTTTTGTAGGTTTGCATGAATTTCTCTAGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGA
ATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAAT
AATATATGTTTACTTTTGGAAGGAAAAAGATGTGTATGACTGTTCTCAAGCAAATGAAAAATTCCAGCTTTTATGAAGTTAATTTCTGCTGTTAACATGC
TACCTAGTGCATTCCTAGAATCCTAGTTAGTGTCTTAAACCTTGGTTGACCTATTCAGCAGAATGCAAGGTTTGTAGGGATTACTATTTGAGAAAGGAAA
ACCAGTGCCTAGGTGCTTTCTTGAGTATGTAGTTTACTACTGAACCACCTATGTCCCAAAATATAACCTGGACATTTCCTGTCTAGATTCATAGTCCTAT
AAAATATTTCTTTCTGTAGTAGTTAGTAACATTTTTGAACGGATGTAGTATTTCACTATTTTTGTATCCTCACATGTTCAGCATTCACCTTTGCGGACAA
AAAAGGCACATGACATTTTCTTTGAATGTTTGTTACTCTTAGATTGCAGGGGTGTAATTCATTGACTATTGACTGCCGTACTGACCACATAAAAACCGCT
GCTAAGATGGTGCAAAACAGGGTTCTTTGTTAAAAGATTAGCTATTCTTTTGCATGTACTGTGAACTTTCTATTTCTATTTTTATTTTTATTTTTTTTTG
TGTTGTTCTCCTTGTATCTTCTCTGAATAGTTGAGCAAACAGGAGGACTTACTCCTCATTTCTGTTTAAGTGGAAAAACATGAGCTGCCACTCTGGTCTT
CATAATTTCTACCCAAGTTTGCATGTGATTGTAATGCACATCTCTTTGTAAGTATCGA