Detailed information on CNT30691413


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003018, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115925Oryza sativaOryza nivara37.2546.1894.91393forward

Expression of CNT30691413

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRVSAAAVLLVLFAIHFASKTDSLQCMLECWVLPQT*

>peptide 2 (77 aa)
ALPIRRKAQAHAAANAAARELPRPPPTPRAHAACHLSRELTRPAASVALELPPTPSRASSRSRRLRRRAQAHAATPR*

>peptide 3 (36 aa)
PLSPSGARRKLTPLPTPPRASSRGRRRRRELTRPAT*

>peptide 4 (95 aa)
RSPHPAQGASSRRCQRRRARAPAAAADAASSRGLPPKPRAHAACRLRRARAPTDAVARELPQPPPPPPCASSRRYPTLAASGHGGSGAGYHFSTI*

Sequence

>CNT30691413
CCGCTCTCCCCATCCGGCGCAAGGCGCAAGCTCACGCCGCTGCCAACGCCGCCGCGCGCGAGCTCCCGCGGCCGCCGCCGACGCCGCGAGCTCACGCGGC
CTGCCACCTAAGCCGCGAGCTCACGCGGCCTGCCGCCTCCGTCGCGCTCGAGCTCCCACCGACGCCGTCGCGCGCGAGCTCCCGCAGCCGCCGCCTCCGC
CGCCGTGCGCAAGCTCACGCCGCTACCCCACGCTAGCTGCCTCAGGCCATGGAGGATCTGGTGCGGGCTACCATTTTAGTACTATTTAGTCCCTTCAACC
AAACAGGCTATGACTAAAAAGGACTAATGTTTTAGTCTTGGGGCTAAACTTTAGTCCTAGTCCTGGGACTAATGTATCCTTAGTTCCTAACTTTTTTTTC
AAACTTACAACTTTTTCATCACATCGAAACTTTACTATACACACAAATTTCTAATCTTTCCATCACAACATTCCAATTTCAATCAAACTTTTAATTTTGA
TGTGAACTAAATAGAACATCCGCAGAGCAGTACTGGAGGAGGGTGGAGGAGATCGGAAGGCTCGGCAAGTGGCTGGCCACCGAGGACGAGCATGCATGGT
AAGAGGCTAAGAGCATCAATGACGCTTCATGGCGACCAGAGATGAGGGTATCAGCGGCTGCCGTGCTCCTGGTTCTATTTGCCATTCATTTTGCCTCTAA
GACTGATTCTCTGCAGTGCATGCTGGAATGCTGGGTGCTGCCGCAAACTTAATTCGTGTTATGGGAGACTCGGTCGGCCCACGACGGTGAATGGATTAAT
TAACCTCACGAAGCTAGTATCTAGATCAGCATCGACAGCTGGTGAGTCTTGGGAAGAAGAAAACGGCGGGTGGCGAGCTTCATCACCGCCTTCTCGGCCC
TGTTCACTTTAATGTCATTTTAAACCTTATCAATTTCTGGCAATACCAAAATTTTAGTAAGGTTGGCAATATTATCAAATTTTGGTAAGATAGCTATTTT
GGATGTGCTTACTTTGTTGCCAACGTACATGCTACTAAATTTTGGTCATTACTGT