Detailed information on CNT30691342


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552482Oryza sativaOryza glaberrima82.8698.0199.29986forward
CNT30369626Oryza sativaOryza glumipatula86.2284.199.121026forward
CNT30100577Oryza sativaOryza rufipogon59.562.38100708forward
CNT30575255Oryza sativaOryza barthii79.1610099.58942forward

Expression of CNT30691342

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGMVTSLWQQLHILQENL*

>peptide 2 (55 aa)
QISLRLYSAGSNMCRGFCFASTATCRATGTRARARPRAVLTPRPPPRSGARSSPF*

>peptide 3 (80 aa)
LRYLFASTPPGATCVAAFASLPRPHAAPRAPARARARAPSSRRVRRPDPAHAPPPFEPPSPAPPRATARRSRTDLVNSPP*

>peptide 4 (75 aa)
SDISSPLLRREQHVSRLLLRFHGHMPRHGHPRARAPARRPHAASAAQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

Sequence

>CNT30691342
CTCAGATATCTCTTCGCCTCTACTCCGCCGGGAGCAACATGTGTCGCGGCTTTTGCTTCGCTTCCACGGCCACATGCCGCGCCACGGGCACCCGCGCGCG
CGCGCGCCCGCGCGCCGTCCTCACGCCGCGTCCGCCGCCCAGATCCGGCGCACGCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCCGCGCGCGAC
GGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCAGCCACCACCTAAATCGCAATGCCTTTCTCCGCTA
GCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGATGGTGACAAGCTTGTGGCAGCAACTGCA
CATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAA
ACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATA
ACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAATTGCAAATG
AACTCATCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGATTACGTCGTCTCTACATTGTGTATTGGCTT
CCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAATTTTGAGTTGATCATGAGGCCAGTCACAATTCTTAGTAGTGAATTAT
GAATTTCTAAATGCATTATGTTAGTTTCATGGCTTGATCCTTGGTTTCTTTGTTTTGTAGGTTTGCATGAATTTCTCTAGGAATGCCCAGTGAGTGATCC
TGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTAGCGGAACGTTCATTGTCCCATGCTACTCAGCTT
TGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTGTATGACTGTTCTCAAGCAAATGAAAA