CANTATAdb - search

Detailed information on CNT30691328

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 2e-74

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-87

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30191038	Oryza sativa	Secale cereale	62.08	51.74	92.39	460	forward
CNT30301530	Oryza sativa	Triticum aestivum	62.08	26.02	93.04	460	forward
CNT30143320	Oryza sativa	Lolium perenne	61.94	69.13	92.81	459	forward
CNT30107357	Oryza sativa	Oryza longistaminata	100	99.2	95.95	741	forward
CNT30575387	Oryza sativa	Oryza barthii	77.33	100.17	99.3	573	forward
CNT30115854	Oryza sativa	Oryza nivara	99.46	97.75	99.46	737	forward

Expression of CNT30691328

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKI

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVLTKICIPPRRRSTRWRVDSFWML*

Sequence

>CNT30691328
ACGATTTAATAAGAATATGCAGCATTTTCAAACTTGCAACTCAGATAAAACATCAACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAGGTT
CAAATCCAACTTATTCATAAAGCATACTGCTGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGACACA
AGTAGACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGACCAGGCACATCGGCAGCTCCACCAAACTGGCTGATTACTGACCACCACGGAG
GCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG
TCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCT
TGACAAAGATCTGCATACCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGGTCCTGCCATCCTCCAGCT
GCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACCTC
GAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCT