Detailed information on CNT30691288


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000903, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30117067Oryza sativaOryza nivara46.7410099.38481reverse complement

Expression of CNT30691288

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MILYIKLSVCVPQLIPGRGFYAQISSEITSEFLGVTTC*

>peptide 2 (38 aa)
MLYLVIICLAPGLELDLYSRVWLFRMVGPVQHGCAVQC*

>peptide 3 (65 aa)
AGEFMPLVIFIEGVIMIQEWCTVVSCVVQRVLSQPLFGYFPVSRRMVDMLMRLCLVDTVVHLWPE*

>peptide 4 (69 aa)
MLLLQMSLYYAILWYPCALAYLLCGLLSMSYAHSCNNQSTSVEEKGSRRRRRLAYTPVELPVGVEPELR*

>peptide 5 (51 aa)
MLILAIINQPQLKKKDPEGEDVWLIPQLSCLWEWSRSFARFYIPLQFSFLL*

>peptide 6 (58 aa)
MFFVISLTPLTIIMDVIPGNNLLSSWFGVRSVQPGMVVQDGWACAAWVCCSVLIKISD*

>peptide 7 (69 aa)
WGVHASGYIYRGGDYDPGMVHCGELCCAKGIVTASIRVLSSIATHGRHVDEAVSCGYSGTPLARVKLFE*

Sequence

>CNT30691288
GCTGGGGAGTTCATGCCTCTGGTTATATTTATAGAGGGGGTGATTATGATCCAGGAATGGTGCACTGTGGTGAGTTGTGTTGTGCAAAGGGTATTGTCAC
AGCCTCTATTCGGGTACTTTCCAGTATCGCGACGCATGGTAGACATGTTGATGAGGCTGTGTCTTGTGGATACAGTGGTACACCTCTGGCCAGAGTAAAA
CTATTCGAATAGCCGTGCCCGCGGTCATGGGCGGGTTGAGCAATGTTTTTCGTGATTAGTCTCACACCTCTCACAATAATTATGGATGTTATACCTGGTA
ATAATTTGCTTAGCTCCTGGTTTGGAGTTAGATCTGTACAGCCGGGTATGGTTGTTCAGGATGGTTGGGCCTGTGCAGCATGGGTGTGCTGTTCAGTGTT
GATTAAAATTTCTGATTAATTACTCCACTGTTTTACTTCTCTTAAATGTTTTGCTAAATGCTGCTTTTGCAAATGAGCCTATATTATGCCATCCTTTGGT
ATCCTTGTGCACTTGCATATTTGCTGTGTGGCTTGTTGAGTATGTCATATGCTCATTCTTGCAATAATCAATCAACCTCAGTTGAAGAAAAAGGATCCAG
AAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCCGGAGCTTCGCTAGATTTTATATTCCGCTGCAGTTTTCTTTTCTTTT
GTAAGTATGTAACACTATTATTGATGATTCTGTATATTAAATTGTCAGTTTGTGTACCTCAGCTGATTCCTGGACGAGGGTTCTATGCACAAATTAGTTC
GGAAATTACTAGTGAATTTCTGGGCGTGACAACGTGTTAGTTATTAATTATTTTTAACATAAAATTTTAGTTATTTGTGAATTATATATATTCCTATATG
GACTCTAGACTCATCTTTTAATATTTCTTTTTTTAATTCCGAATTATCTGTAAATTGTATTTATATATAGACTCTAGGCTCTTCTTCCAATAATATTTAG
TTTTATTTCTAAATTTTTGTTATTTCTAA