Detailed information on CNT30691218


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10716|CYSP1_MAIZE, E-value = 9e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519738Oryza sativaSetaria italica25.2733.3987.77188forward
CNT30376514Oryza sativaArabidopsis thaliana13.8434.9283.5103forward
CNT30393337Oryza sativaTriticum turgidum13.5847.8786.14101forward
CNT30588616Oryza sativaMusa acuminata8.7426.6487.6965forward
CNT30509501Oryza sativaSolanum lycopersicum13.7126.2982.35102forward
CNT30141683Oryza sativaLolium perenne21.132.8589.81157forward
CNT30685650Oryza sativaTriticum urartu10.2231.9389.4776forward
CNT3051634Oryza sativaAmborella trichopoda26.2117.4781.54195forward
CNT30116007Oryza sativaOryza nivara66.2672.7198.17493forward

Expression of CNT30691218

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVGGLLIRIYSFEVWMADTVETIESTPHLLRTLEPLQIL*

>peptide 2 (42 aa)
MRRSQREEHRDQGACHRCTGTKHHQCMFACWQQSDPHRQRQH*

Sequence

>CNT30691218
CCAGAGTCCCTTAAAATGGAGAATGTGCAAGACGCAAATTCGTAGCAATAGACAGAGTTATTCCATGTAAACAGACCACATGCATATAATACAGACCATT
CAAAAGATTGGTAATAGTAAAAATACAAGTTCGTGAATGGCGATAATACTTAAAGCTACCTCCAAATAGCGTGTAGCATTGCGTAGCAAACCAAGCATAT
AACTTAGGACAAACTAAGTATATTTCGTAGTTCTAGCTTATATATAATATCAGAATCACCAACTGTGAACCATCCACAGGATGGTCGGGGGACTACTGAT
CAGAATCTACTCCTTTGAGGTGTGGATGGCAGACACGGTGGAGACCATAGAATCCACGCCACATTTGTTGCGGACGTTGGAGCCCCTGCAGATCTTGTAG
TACCCATGCTCTCCCCAGTTCTCGCCCCAGGAGTTCTTGATGATCCAGTAGGCCTTATCCTTTAGGCGGATTGGAGCAAAACCAGATGCGCCGTAGCCAA
CGAGAAGAACACCGTGATCAAGGTGCCTGCCACAGATGTACGGGCACGAAACACCACCAATGTATGTTTGCATGTTGGCAGCAATCTGATCCTCATCGAC
AGAGACAACACTGAAGTTCTGAACTGAAGTAACAATCTTCGACTTGTCAAATTTGCAGGTGCCATCCCTCCCAGTGTAGGGGTAATCCTTCTCACTCTCA
AGGCCACCGGATTTCAAAAGATAGCTGAAGGCGTTAGTCATCAA