CANTATAdb - search

Detailed information on CNT30691212

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007022, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30106312	Oryza sativa	Oryza longistaminata	84.42	20.87	94.88	645	reverse complement
CNT30104758	Oryza sativa	Oryza rufipogon	97.38	99.47	98.25	744	forward
CNT30574840	Oryza sativa	Oryza barthii	37.17	87.38	85.21	284	reverse complement

Expression of CNT30691212

Peptides detected in this lncRNA

>peptide 1 (38 aa)
SRPESGTAVQRHLTGACRGKNGANRFLRNRDLSTSPRT*

>peptide 2 (85 aa)
VTPRIWHRRTTAPDRSVSWEKRREPLPTKPRSQYQSQDIALVAAQTARECNRRHGRGEHQQQQQQRNQRSNTQHHRQQQGTRTKP*

Sequence

>CNT30691212
TGTCACGCCCCGAATCTGGCACCGCCGTACAACGGCACCTGACAGGAGCGTGTCGTGGGAAAAACGGCGCGAACCGCTTCCTACGAAACCGCGATCTCAG
TACCAGTCCCAGGACATAGCGCTGGTTGCAGCTCAGACAGCCCGAGAATGCAACCGACGACACGGACGAGGCGAACACCAACAACAGCAGCAGCAGCGGA
ACCAACGGTCTAACACCCAACACCACAGGCAGCAGCAGGGAACTAGGACGAAACCCTAATCTTTACTTCACTTCAACTTCATCTTCGGAGCTGACTGAAC
TATATTTATATAGAGAGCAAGGGTGAGTACTTACGTACTCAGCAAGCCAGGGGAACTTAGGTGGTTAATGCAGGCTTCAAGGGAAGGCTGTTATTTTGCA
AACAGTTTTGTTTTCAAGTTTTCAACAATCTAAGTGTGTGCTTTCTACAACCAGAGCGAGACAAGTCTCAGCTCGGTCGGGAGGTGAGAAGTAACAAATT
TATTTATCACGATTTGCACAACTCCCAGAGTTGGCTTCAAATCTAGTTTTTCCCAAACCAAACCAATTTTCCAAACTTCCCGATAATAGAGGTCCCCAAA
CGACCAATCACTTCCAGGGACACCCGGTCCCGCTGTCCCCAGGGTAGCTAAATGCTTCCCAAGCATTAGGTTTCCCAAACCTTAACACCTTTTCATAAAA
CAGGGTAAAACAAAAACTACGCTAAGGAATCACCTCACATCCGCCCATGACCGTGGGCACGGCT