Detailed information on CNT30691200


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066951Oryza sativaLeersia perrieri31.0110.7285.58437forward

Expression of CNT30691200

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGSIIRRVAYNLEQSSASRSWCGTCSGHQQTQLIGW*

>peptide 2 (35 aa)
MDYYDALWLWMPSEFWKHIPCGCHLADHLHSCIGI*

>peptide 3 (80 aa)
MKSIRRKREAALASILFCCTPEAMKDLLACQLPLMRTNLFILEKIKEKRPGIFRLVPQGGGLAGVALQVVHGKHHSESCI*

>peptide 4 (74 aa)
VNKLLEMLSTCSGLIGVEDGNSLRPPFSLLKLTSTMMIVLEDTNSCGKAPDSMLWERLRRSNPVRLPRDGEMFP*

>peptide 5 (55 aa)
MNLRRELLSCSVHELVREARLMSSTSARARTGLINEEHQEEERSCPCFHFILLHP*

>peptide 6 (49 aa)
MEAWTIMTLCGCGCHLNFGSISPVDAIWLITCIVASGFRTPQGILVDHT*

Sequence

>CNT30691200
GTAAATAAATTACTTGAGATGTTGAGTACCTGCAGTGGCCTGATAGGGGTTGAAGATGGCAACTCGTTGAGACCTCCATTCAGCCTGTTAAAGCTGACGT
CAACGATGATGATAGTGCTGGAAGACACCAATTCTTGTGGTAAGGCACCAGATAGCATGTTGTGGGAGAGATTGAGACGCAGCAATCCAGTGAGGTTGCC
AAGAGACGGTGAGATGTTCCCCTGAAGGTTCCTAGAAGCCAGAGAAACATCAGTTACCGTCCCATCTTGGCTGCAGGCGATCCCGTCCCATTTGCAGCAA
TCTGTGCCGTCCTGCCATGATGCAGAGAGGCCTCCATCCTGAGAGAGCTCCCTGATGAACTTGAGGAGGGAGCTCCTGTCCTGCTCTGTACATGAACTGG
TGAGAGAGGCGAGGTTGATGAGCAGCACCAGCGCAAGGGCAAGAACAGGACTAATCAATGAAGAGCATCAGGAGGAAGAGAGAAGCTGCCCTTGCTTCCA
TTTTATTCTGCTGCACCCCTGAAGCCATGAAAGACCTGTTAGCTTGCCAGTTGCCACTGATGCGTACAAATTTGTTCATCCTTGAGAAGATCAAGGAGAA
ACGCCCAGGGATCTTCCGACTAGTTCCACAAGGTGGTGGGCTAGCCGGCGTTGCTTTGCAGGTGGTACATGGGAAGCATCATTCGGAGAGTTGCATATAA
TCTAGAGCAATCATCGGCGTCGCGGTCGTGGTGCGGCACATGCTCTGGACACCAACAAACACAGCTGATTGGTTGGTAATCTGGTGACTATCTCGTCTCT
ATTATTATTGTTGTTGTTGTTGTTGAGACGATCACGCAAGGGCCAAGGCGTTTACTTTCTGCTGTCAAGCGTGCGCGTTGGTTGGCTTATTTGCTCCACA
CGTTCAGCTGTTATCCATCCTTCAGGCTTCGCCGTTGTATGACTGTTGACCCATGGAGGCATGGACTATTATGACGCTTTGTGGTTGTGGATGCCATCTG
AATTTTGGAAGCATATCCCCTGTGGATGCCATCTGGCTGATCACTTGCATAGTTGCATCGGGATTTAGGACACCACAGGGGATACTGGTTGATCACACAT
AATCATCTTATGTATTCTTCCGTTCTAAAATAACTTAACCGATAATAGAATATGACATAACTTAGTACAATAAATCTATAAACGGATTACGCACCAACAG
GCTAACCCTTATGGGCCTACACGTCAGAGGTAAGTAGAAGAGCCTCATCGGTGTAGACATGGTTGAATGTAGAGTACTCTTGAATGTACTTCCTGGACCT
GGAGCTACACAAGCCTTAGTTTAATTGAACCGTTGTGTAAAAATTGTATTTTTTTTAAGTCATGGTCATATATTTCTTTTTCTGTTTCTAATTCCAGTTT
GCGTACGAG