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Detailed information on CNT30691196


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002853, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100547Oryza sativaOryza rufipogon10076.7899.821098forward
CNT30115942Oryza sativaOryza nivara101.3776.8198.471113forward

Expression of CNT30691196

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVVTTTAAAAACFGLHDQPETWVGNDSHKLFYQ*

>peptide 2 (32 aa)
SLFPRSPLLSLTAHALPVPPLLRQRRRRRRSP*

>peptide 3 (64 aa)
LFFLVLPFSPSRLTLSQCRRFLGSAGDAAALPSAGYRAPLRRPLKQMSRSRESVYWLHASLPLS*

>peptide 4 (40 aa)
MINIVLVIHLLAWLFPSCTCDTSTWLVRWDNLKLFVNFLN*

Sequence

>CNT30691196
ATCTCTTTTTCCTCGTTCTCCCCTTCTCTCCCTCACGGCTCACGCTCTCCCAGTGCCGCCGCTTCTTAGGCAGCGCCGGCGACGCCGCCGCTCTCCCTAG
CGCCGGCTACCGCGCCCCACTCCGGCGACCCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTATTGGCTCCACGCTTCTCTGCCCCTAAGCTAACCC
CAGCCACCAGTCTCCTGCTGCTGCTGCCGCCGTGGAGATGGCTGGTGGAAACACAGCGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGGATCTACTC
TCCTCCCCTATTTTAATTTTTTGGTTACCTCGGTTGATTCTACCGTGATTGAAAAATGTGTGGTTCAGCTCCTCCTCCAGAACTCCAAGTCTTCTCTTCT
ACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGACTGATTGTTTCCCCCCTCTTGAACTGAACCCCCATGC
TCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATATTTGACTGCTTCCTGACATCTTCCTTGATCTGCTTCTGGTGATTCTC
TTCCTCCTCTTCAGACTGATCCTCTTGCTTGATTTTCGCTCCATCTTGCTTCTTGACCTGAGTTTCATCTCTTCCTAGAGCTGAAACCCTTCTTCATCCA
AGAACTAAACAACCCTGCTTCTCCTTCAGATTTGGTTTTCCTCTCTCTGATTACTTGGCCATGGTTACTACTACTGTTGGTTCATGTATTGGTTTGAGCT
GGACTTCAGTTGAGCTATTTCTCTCTGGGTGGAGCTAACACTTAAGCTAATTTTTCCTGGAGCTTGGTTCTATGGTTGTAACTACTACTGCCGCAGCTGC
TGCTTGTTTTGGTTTGCACGACCAACCCGAGACTTGGGTTGGAAATGATTCACACAAATTATTTTATCAATGATAAATATTGTACTGGTGATTCACCTGC
TTGCATGGCTATTCCCATCCTGTACTTGTGACACCTCAACATGGCTTGTTCGGTGGGATAACCTAAAGCTATTTGTTAATTTCCTTAATTAATGGAAA