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Detailed information on CNT30691190


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003087, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552478Oryza sativaOryza glaberrima49.696.1892.42567reverse complement
CNT30110571Oryza sativaOryza longistaminata78.2614.298.54893reverse complement
CNT30100438Oryza sativaOryza rufipogon73.0958.6993.29834reverse complement
CNT30116012Oryza sativaOryza nivara39.4447.8791.78450reverse complement

Expression of CNT30691190

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MQLFPFRIWVSLLRNSYYLCGSYDDFVFGGGGMRTYPCLVGGIRSKV*

>peptide 2 (63 aa)
MYDIMMNEMMRCMYDMIQCLWRYFVLRTCHRTILSGKLFLRLLILLMVFHGHWNGCNSLYAIG*

>peptide 3 (32 aa)
MVYSHDLTLLISHSINLSFRTASKAVGKIRIN*

Sequence

>CNT30691190
GGAGAAAACTAGAAATGTTTGATAAAATGAAACCATGATTTTCATAAAGGCATAGATATGCAACAAAATGCAAGGGTGCAGCTCACGAAAAGTTATGGAT
TAAAAATGAAGCGTCAACGGAGAAACCAATAAATCGTTCCGAACAAGCAAATTATGGTTCTCATAAAATCAATAGGATGCAACCAAATGTAGATGTCTAG
CATGTAACCAATATATTATTTTCGATAAATAGGGACACGAAACTCTTGAACTTAGTTCTAAGTCTACGATTAAAACGCCAGAGCACAAAAAAGCCGCAAG
GTTTAAATGCATGCAACTATTTCCTTTTCGAATATGGGTCAGCCTACTTAGGAATTCATATTATTTATGTGGCTCTTACGATGATTTTGTCTTTGGTGGG
GGTGGTATGAGAACCTATCCTTGTTTGGTTGGTGGAATACGATCTAAGGTGTAATGGCTATGTTGTTTTCCAATAACAATACGATATTATTGATTTTAAA
TGTTTATAAAACTTTTCAAGAATACTTGATTTAGAATCTCTAACCATTAGGATGTAACAAGGTTCAAGTCTTCATGGTCTACAGTCATGATCTAACCTTG
TTGATCTCACATTCGATAAATTTAAGTTTTAGGACAGCAAGTAAGGCGGTTGGGAAAATAAGGATAAATTGAACAAAACTCTGGGTTACATCTTAGGGGT
TGACAATATTTGTTCTCCAGTTGCTAATTAGTCATATGCAATCTAATCCAAGGTGTTCTAGGAATATTTGTCGAGTCATACTGGATGCATCAGGACGGTC
TCATTATGTGCATCCATAAACTTGGTCGTGGTAGAAAACGGGATGCTAGATGGCATGTGCAGCAATAACTTTTCTTTTTCTCAAAAAGGCAAAGATGTAT
GTATGATATCATGATGAATGAAATGATGCGATGCATGTATGATATGATACAATGCTTATGGAGATATTTTGTATTGCGTACATGCCATAGAACAATCCTT
TCGGGAAAATTGTTCTTGAGACTATTGATCCTACTCATGGTTTTTCATGGGCATTGGAATGGTTGTAACTCTTTATACGCTATAGGCTAGGATAAGGTGA
CAAAATTAAACATTTTTTTACCTAGACTCGTAACAAAGTTC