Detailed information on CNT30691178


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96288|BBX24_ARATH, E-value = 3e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524100Oryza sativaSetaria italica31.0325.7192.59135forward
CNT30459528Oryza sativaSaccharum spontaneum26.2124.3195.61114forward
CNT30346294Oryza sativaEragrostis tef22.5322.6384.6998forward
CNT30583976Oryza sativaEchinochloa crusgalli25.9837.5498.23113forward
CNT30116481Oryza sativaOryza nivara26.2119.1695.61114forward

Expression of CNT30691178

Peptides detected in this lncRNA

>peptide 1 (65 aa)
RSRSRRTGGARRRPSPAAGTAARACRRRRSGPAADDGDDARRSPWAGRGGRSHGRRCRRRRARRR*

>peptide 2 (99 aa)
MGGAWWSESWASLPPSQGEAEVALVVAGERAGDVDGLVAVAAEERAVLHAEDERRLLLAHVAAREPRRERLQRQPLVLPGQLVRRVHLHVARRAQRRLVR

>peptide 3 (96 aa)
AGLVVGELEELVDGPALRQELRRGRVDGDGRGRLLMMVMMLGGAHGRGVVVGVMGVAAAVAGRGGGSAGGCRRACRGRGWARRSRGRRARGPPRRR*

>peptide 4 (65 aa)
MGSSQSRQKSARSSTQKMNAAFSWHTSQRGSLAESASSGSRWCFPASLFAACTSTSHAAHSAASSA

Sequence

>CNT30691178
GCCGGTCTCGTAGTCGGAGAACTGGAGGAGCTCGTCGACGGCCCAGCCCTGCGGCAGGAACTGCGGCGAGGGCGTGTCGACGGCGACGGTCGGGGCCGGC
TGCTGATGATGGTGATGATGCTCGGAGGAGCCCATGGGCGGGGCGTGGTGGTCGGAGTCATGGGCGTCGCTGCCGCCGTCGCAGGGCGAGGCGGAGGTAG
CGCTGGTGGTTGCCGGAGAGCGTGCCGGGGACGTGGATGGGCTCGTCGCAGTCGCGGCAGAAGAGCGCGCGGTCCTCCACGCAGAAGATGAACGCCGCCT
TCTCCTGGCACACGTCGCAGCGCGGGAGCCTCGCCGAGAGCGCCTCCAGCGGCAGCCGCTGGTGCTTCCCGGCCAGCTTGTTCGCCGCGTGCACCTCCAC
GTCGCACGCCGCGCACAGCGCCGCCTCGTCCGCGC