Detailed information on CNT30691132


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105994Oryza sativaOryza longistaminata29.5694.2498.33360forward
CNT30100377Oryza sativaOryza rufipogon81.6997.5599.9995forward
CNT30575390Oryza sativaOryza barthii10096.3699.341218forward

Expression of CNT30691132

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPDRLLRKPRRKVQCRDLLVISSRWYKPRC*

>peptide 2 (30 aa)
MEVCGLVMWEEPSLSGFKLFLLLLSLAHGQ*

>peptide 3 (50 aa)
AAASPAAGGDELLQASFFLMINLVLPTPRRCLTIGDCSATFLKYLGLSLS*

>peptide 4 (41 aa)
MFDNWRLQRNFSQISRPFFVLMKRSLQDWKKEVILGNACCV*

>peptide 5 (79 aa)
MVQTQVLASPKYQKSSSPSSLLLHQYPSSHTAQRLIDQRSRQTGVFVVDLCLLCTHIYRVRTEARAVGALRCQPQNLLH*

>peptide 6 (30 aa)
MQSVYPVLSRGKDLPFHGPRSTLFITNQSR*

Sequence

>CNT30691132
GCGCGGCGGCGTCGCCGGCGGCGGGCGGAGATGAGTTGTTGCAGGCCTCCTTTTTCTTGATGATAAACTTGGTATTGCCTACTCCTAGAAGATGTTTGAC
AATTGGAGACTGCAGCGCAACTTTTCTCAAATATCTAGGCCTTTCTTTGTCCTAATGAAGAGAAGTTTGCAAGATTGGAAAAAAGAAGTGATTCTTGGCA
ATGCCTGTTGTGTATAGAACATTTTATTCACTTGGGTGCCACTGATAAGCCTAATTCACCATGAACACCTCTCAGTTGGGTTTTTGTACTTTAGCCTGCA
CTCTGTATCTTTATTTATGCAGGAGGGATTACTCCGGATAAATCATAAAGGGTCTAGATCCAATGTCACGAAGACAACTTCTGCATTCTGTCTGAGGATA
TGACGATTCACAACTGAACCATGCCTGACAGATTATTGCGCAAACCGAGGCGAAAAGTTCAGTGCAGAGATCTGCTCGTCATTTCGTCGAGATGGTACAA
ACCCAGGTGCTAGCTTCTCCAAAATACCAAAAGAGCTCCAGTCCCAGCTCTCTCCTACTTCATCAGTATCCTTCTTCCCACACAGCTCAGAGGTTGATCG
ATCAACGATCTCGCCAAACGGGCGTTTTCGTTGTCGACCTCTGTCTCCTTTGTACGCATATATACCGCGTACGTACGGAGGCGCGCGCAGTGGGCGCGCT
GCGCTGCCAGCCCCAAAATCTGCTCCATTAGTTGCTTGTTTGGGAGCGCTCCTCGCTGAGCTTTGTCCCCAACGGGATCACGAGAGGGGGAGGAACAAGT
TGCCCAGATTTTGGACCCTTGCCAATGGAAGTGTGTGGGCTTGTCATGTGGGAAGAGCCGTCGCTTTCAGGGTTTAAGCTGTTTCTGCTCCTCCTCTCTC
TTGCTCATGGGCAATAAGTGAGATTTTGGTTGCGCATTAGAGGGATGTGTGCCATGTTTATTGCAGCTTTGGCTTTATTTTAGTCCCTCGACCTCTCCCA
AGTGATGATAAAGACTGGTTGAATAGTCAGCAGGCAGGCCGTAGATTGGCTAGCGTATGTAACAGTATGATGAGATCATGCAGTCAGTATATCCTGTTCT
GAGTCGTGGAAAAGATTTGCCCTTTCATGGACCTAGGTCGACTCTGTTCATCACAAATCAGAGCAGGTAAAAATATTTTGCCTAAACAGTAGTATATTTT
TAATCTTTGAACTGATGA