Detailed information on CNT30691013


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000455, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596061Oryza sativaOryza meridionalis28.314.7592.47186forward
CNT30100142Oryza sativaOryza rufipogon67.1282.5898.64441forward
CNT30117344Oryza sativaOryza nivara23.4439.5987.01154reverse complement

Expression of CNT30691013

Peptides detected in this lncRNA

>peptide 1 (94 aa)
RRRGRGWRSDGRGRRPCGRRSDGRRPHGCRRGRRVCGRRSDGRGRRCRDRGTAAGGERAGGPPPLLRASAARSRARAMRFGVRRENRHIWPNSP*

>peptide 2 (39 aa)
AAGSRVEERWAWAAALRAEERRAAAAWLQARAAGLRAEE*

>peptide 3 (77 aa)
GGGVAGGGAMGVGGGLAGGGATGGGRMAAGAGGGFAGGGVTGAGGGVATEERQPAASGRAGLRLYSEPPPPDPERGR*

>peptide 4 (71 aa)
MRYISDGVPDERSAGDALNVGISNDSCEVLVMIHVNTNEYTMIHVRTTDDTREVPVMININLSTMISVRYQ*

Sequence

>CNT30691013
AGGCGGCGGGGTCGCGGGTGGAGGAGCGATGGGCGTGGGCGGCGGCCTTGCGGGCGGAGGAGCGACGGGCGGCGGCCGCATGGCTGCAGGCGCGGGCGGC
GGGTTTGCGGGCGGAGGAGTGACGGGCGCGGGCGGCGGTGTCGCGACAGAGGAACGGCAGCCGGCGGCGAGCGGGCGGGCGGGCCTCCGCCTCTACTCCG
AGCCTCCGCCGCCAGATCCAGAGCGCGGGCGATGAGGTTTGGCGTGAGGAGAGAGAATCGCCATATTTGGCCGAACTCTCCCTGATTTGGTGCATCCTCT
ATTTTTTGAGGCCTTGATACCGTATCTGCTGGAGCGCCGTTTTCTCCTCTCATGCGCTATATTTCGGATGGAGTACCGGATGAAAGATCTGCTGGGGACG
CTCTAAATGTAGGAATCAGTAATGATTCTTGCGAAGTACTGGTAATGATACATGTAAACACCAATGAATATACGATGATACATGTACGTACTACTGATGA
TACACGTGAGGTACCGGTGATGATAAATATCAATTTATCAACAATGATATCTGTTAGATACCAATGATGATATGTGTAAATTTTTAATGATAGTACTTCT
TATCAATTATGATCGACCATGACTACTAAGCCCGTCCTAAAATATAATAACTTTTAC