Detailed information on CNT30691005


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107197Oryza sativaOryza longistaminata12.5223.7694.4472forward
CNT30100089Oryza sativaOryza rufipogon93.39100100537forward

Expression of CNT30691005

Peptides detected in this lncRNA

>peptide 1 (50 aa)
HIAVSSSLHGDGAAASRSPAHPPPLFGSPAARRDSRKCFCVAITTRINFR*

>peptide 2 (75 aa)
ATSPSRLVSTATAPPLLGRRRTRRLFSARRRRVGTRGNASASPSLPESTSDDRRACLPPKRRNASICFMKQPELN*

>peptide 3 (31 aa)
MLLRRHHYPNQLQMIDVLACHQKGEMQAYVS*

>peptide 4 (38 aa)
MIQSILTVRKSPFLASCFSQLIFECPNMHCFTTIYVEQ*

>peptide 5 (29 aa)
MTTQMQHESGVHILTWNIWTGYQDLKLPS*

Sequence

>CNT30691005
GCCACATCGCCGTCTCGTCTAGTCTCCACGGCGACGGCGCCGCCGCTTCTCGGTCGCCGGCGCACCCGCCGCCTCTTTTCGGCTCGCCGGCGGCGCGTAG
GGACTCGAGGAAATGCTTCTGCGTCGCCATCACTACCCGAATCAACTTCAGATGATAGACGTGCTTGCTTGCCACCAAAAAGGAGAAATGCAAGCATATG
TTTCATGAAACAGCCTGAGCTCAATTGACCAAAGGCTGAAGCAACATGCTAGGGGAAAAAAACAGTTGTTATGTTTTTTATCCATTCAGTTAAAACTTAT
AAGTAGTAAGCACAAGAGAGGCAGCAAGGCCAGCAAAATTCAGATGACTACTCAGATGCAGCATGAAAGTGGAGTACATATCCTGACCTGGAACATATGG
ACAGGATATCAGGATCTTAAACTGCCTTCATGATCCAGTCCATTTTGACTGTGCGCAAGAGCCCTTTCTTGGCTAGCTGCTTCTCCCAATTGATTTTTGA
GTGTCCCAACATGCACTGTTTTACAACGATCTACGTTGAGCAATGAATGTTTTACAAATAAGTTCACATCGGAAT