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Detailed information on CNT30690998


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004913, E-value = 1e-130

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30551432Oryza sativaOryza brachyantha30.078.7990.86175forward

Expression of CNT30690998

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MRIPRLLLLLSLLSPSLSLLSDQLGLRLDRGLRRDLMPRESIAGDGSGVDLGIRRRP*

>peptide 2 (36 aa)
SDKSACAFLGSSFSSLSSLPPSHSYPTNSGLGWTEG*

>peptide 3 (47 aa)
MHVVGEDYIWHTMEVLCAYGMRNRIWKESEFGMIGVCKVCFLYRKVS*

>peptide 4 (30 aa)
VTRVHAHSSAPPSPLSPLSLPLTPIRPTRA*

Sequence

>CNT30690998
AGTGACAAGAGTGCATGCGCATTCCTCGGCTCCTCCTTCTCCTCTCTCTCCTCTCTCCCTCCCTCTCACTCCTATCCGACCAACTCGGGCTTAGGCTGGA
CAGAGGGTTGAGGCGTGACTTGATGCCTCGGGAGAGTATTGCCGGTGATGGATCGGGAGTCGACTTGGGGATAAGGCGACGTCCGTGACGGTCAGATATC
ATGCGGGATACTTAAGCTAGAGTTCAATGCACGTGGTTGGTGAAGATTACATATGGCATACGATGGAGGTATTGTGTGCATATGGGATGCGGAATCGAAT
TTGGAAGGAGTCCGAATTTGGAATGATTGGAGTTTGTAAAGTTTGTTTCTTGTACAGGAAGGTTTCCTAGGTGGATTAGGACTTCTAGTATGAGTTTGGT
TTGTGGCTTTAGGCTGCCTACCTTATGTATAAATAGAGAGGGAGCGTGAGGCTTCCCGGTATCGCTTTTGAGAGCATTGAGTTAATAGTTAATTAGGGTT
TCGAGTTTAGTCAAGATTTTCGTGAGGAGTGTTGTTGTTGCACTTTGTAAATATAAAGAGGAGTAATAAAGTTATCATCTAC