Detailed information on CNT30690966


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W3M4|Y4744_ARATH, E-value = 3e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596662Oryza sativaOryza meridionalis53.8941.5387.73277forward
CNT30369729Oryza sativaOryza glumipatula52.7254.4293.36271forward
CNT30109108Oryza sativaOryza longistaminata22.7619.9391.45117forward
CNT30149732Oryza sativaBrachypodium distachyon50.5854.7486.15260forward
CNT30100248Oryza sativaOryza rufipogon50.3929.2788.8259forward

Expression of CNT30690966

Peptides detected in this lncRNA

>peptide 1 (40 aa)
WNDAHSAGRRWLAKPGMQLFLTLRTPSLISDKHAGPTDVK*

>peptide 2 (54 aa)
MPASNTAALVSMPSSWGRQPESWLFRRSTSRRESCKCKIDGGIAPVSLLLARAR*

>peptide 3 (64 aa)
VERRALRRPPLVGEARNAVVPDVEDAVLDQRQARRSDRREVVARQREVGEAVAAQVELLDAGEA*

Sequence

>CNT30690966
TGTGGAACGACGCGCACTCCGCCGGCCGCCGCTGGTTGGCGAAGCCCGGAATGCAGTTGTTCCTGACGTTGAGGACGCCGTCCTTGATCAGCGACAAGCA
CGCCGGTCCGACCGACGTGAAGTAGTTGCTCGACAGCGTGAGGTTGGCGAGGCGGTTGCCGCCCAGGTTGAGCTGCTCGACGCTGGTGAGGCATGAGAAA
GAGGAGGGGATCGGCCCGGTGAGCTGGTTCATGCCGGCGTCGAACACTGCGGCCTTGGTGAGCATGCCGAGCTCGTGGGGGAGGCAGCCGGAGAGCTGGT
TGTTCAGGAGGAGCACCTCGAGGAGGGAGTCTTGCAAATGCAAGATTGATGGCGGGATTGCGCCGGTGAGCCTGTTGTTGGCGAGGGCCAGGTAGCTTAA
CTTGGAGAAACCGATGTTCACCGGTAATGGCCCGGACAGGTGATTGTAGTTGAGGAGGAGCGCCTTAGAATCTGTGGCACCGGGGATGCTTCGTCCTTTC
TTGTCGTCTTTTCC