CANTATAdb - search

Detailed information on CNT30690965

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30100132	Oryza sativa	Oryza rufipogon	100	93.28	100	680	forward

Expression of CNT30690965

Peptides detected in this lncRNA

>peptide 1 (41 aa)
KIIIGGQITTSKPTDNPRKSVSHSLLQDRHYKEIHKQIPNP*

>peptide 2 (85 aa)
MRGERRVRGRPLPLLAVVEVLSRRAAGQPLRRGAAMQPLGREPLTRPCAAAASGPRGRGRRKAAMRLRRRGHVTGASGSRWMRQR*

Sequence

>CNT30690965
CAAAATTATAATTGGAGGACAAATCACAACATCAAAACCGACCGATAATCCCAGAAAATCAGTTTCCCATTCGCTGTTACAAGATCGACACTACAAAGAA
ATACACAAACAAATCCCAAATCCCTAAAAACTAAAGCAGAAGCACCTTCTTCCGCTTCATCTGTCAACGAGCGTCCGCTCTGAACATCCCACAACCAATC
CCAAATCATCACAAATCTAACCCAAAAACTAAATCCCAATCCAATCGGAATCATTACAAAATCATCCCAAAATAAATCAAGCACAGGAGACAATCCAATA
ATCACATCACAAAATAAATCACACATAAGATGAGAGAAGAGGTGGAAATCACAAAATAAATCACATCACATAGGATATGAGAGGAGAGAGAAGGGTGAGA
GGGAGGCCGCTGCCGCTCCTCGCCGTCGTGGAGGTCCTGAGCCGCCGCGCCGCTGGGCAGCCGCTGCGTCGAGGAGCCGCAATGCAGCCGCTGGGCCGGG
AGCCGCTAACCCGCCCCTGCGCCGCTGCTGCCTCTGGACCAAGAGGGAGAGGGAGGAGGAAGGCGGCGATGAGGCTGAGGAGGCGTGGCCACGTGACGGG
GGCCAGTGGCAGTAGGTGGATGCGACAGAGGTAGGGATGGTGGTGGCAAGGAGATGGTGTGCGGTGGCGCTGACGGTGGG