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Detailed information on CNT30690953


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109066Oryza sativaOryza longistaminata43.8753.7195.8333forward
CNT30100203Oryza sativaOryza rufipogon39.3993.1599299forward

Expression of CNT30690953

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQAANRKFIDHLWFDLMVDLIIIQNSRFIWLVMINKTK*

>peptide 2 (47 aa)
MMNSISLEMDFALRGGRSQAPPSSDPGQAWPAAPAKRRRRRRRSWPC*

>peptide 3 (61 aa)
MDKFIMEKISVITKRVRTSLMLSLYLVKLEARDPSFGHDELDLLGDGLRAQGRQEPGTTLL*

Sequence

>CNT30690953
ATCCATTCATAGTACAAACTTATAACAATACATTTTTCTTTTGGGTAAATACTAACTGATGGATAAATTCATCATGGAGAAAATTAGTGTAATTACAAAA
AGAGTTAGGACAAGTTTGATGCTTAGTTTGTACCTTGTCAAACTCGAGGCAAGGGACCCATCCTTTGGACATGATGAACTCGATCTCCTTGGAGATGGAC
TTCGCGCTCAGGGGAGGCAGGAGCCAGGCACCACCCTCCTCTGATCCCGGACAAGCTTGGCCGGCTGCTCCGGCGAAGCGACGACGGCGCCGGCGACGAA
GCTGGCCGTGTTGATGAACATGATGTCGCCGGAGTAGAGAGTGGTGGTGGTGGCCGGCGGTGGCGTGAAGAGGTTAAGAAGGGGAGAGTAGAGCAAGGTG
ACAAGAGATGGAGAGTGTGGTGGCGCTGGGAGAAGAGAAACGGTGGCTTCAAGCCTTCAACATGGAAGTTGTTTGTCTGTAGTGGACGATGGGACCAGAG
ACCAGAGCAATGGTGGTGATTTCTTCCTTTGGTGCCATCGCCGATCTTTTCCCCCCATACCACTAGCATGTAATCATGCAGGCCGCCAACAGAAAATTTA
TTGATCACCTATGGTTTGATTTGATGGTGGACTTAATCATCATTCAAAACAGTAGGTTTATTTGGCTTGTTATGATCAACAAAACGAAATAGGCTTTGTC
ATCCAATCATGTAAAAGCATCTTTCTGCACAATTTGGCAAATGCATTGTGATATTGCGA