Detailed information on CNT30690947


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004359, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110523Oryza sativaOryza longistaminata36.0210097.51362forward

Expression of CNT30690947

Peptides detected in this lncRNA

>peptide 1 (38 aa)
HTSFSTSKPKKPREEALNFSVALILAAGREEDDYRTCK*

>peptide 2 (49 aa)
MDVNSMSGSSRCRLPGALHRRRTIFFTAAAVQTFPRLVQDDCLNGEEVI*

>peptide 3 (43 aa)
MKTHGCQFDEWIEPLPSPRSSTPSPDHLLHRCRCPDFPAPRSR*

>peptide 4 (95 aa)
THHSPPLSRRNRGRRLSTSPSPSSLLPAAKKTTIVLVNKPGGSTGTPSCPRHSGARSKRRRSRHRRRSDHCRPNKAEPSRQRLLLEVFLKNPQKS*

Sequence

>CNT30690947
CACACATCATTCTCCACCTCTAAGCCGAAGAAACCGAGGGAGGAGGCTCTCAACTTCTCCGTCGCCCTCATCCTTGCTGCCGGCCGCGAAGAAGACGACT
ATCGTACTTGTAAATAAGCCAGGCGGATCGACGGGAACGCCGTCGTGCCCACGGCACTCCGGAGCGCGCTCCAAGCGCCGCCGCAGCCGACATCGTCGTC
GTTCCGACCATTGTAGACCAAACAAAGCCGAGCCGTCGCGCCAACGTCTTCTCCTTGAAGTCTTCCTCAAAAACCCTCAAAAATCCTAGGCAATGGCGCA
GCAAGTGCGGAGATCGGCTACCGTCTTCTTCACCTCCGGTCGCCGTCGCCATTGTCGATTCCGCCTCCTCCGGTGAGCCATTGTCCGATTCTTCGCGTAT
ACACCATCCCTGGGACCTCACTAACCCCATGAAAACACATGGATGTCAATTCGATGAGTGGATCGAGCCGTTGCCGTCTCCCCGGAGCTCTACACCGTCG
CCGGACCATCTTCTTCACCGCTGCCGCTGTCCAGACTTTCCCGCGCCTCGTTCAAGATGATTGCTTAAACGGTGAAGAAGTGATTTAGGTGCTGACATTT
TCCTGATTCAAGGTTTTAGACTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGACTTGAATTTAATGGGGTAAATCCCTAGTCGGTGTGC
TTGTGGATTGGGTAGACAAGCTTCCGCTGTTCTATATATTTATTTGGCCAGTCGGCCAATGTAACTAAAGTAGATGTAGTTTATAATCGCTTTCATCTTA
TTTGTGTTTGCTATGTATAATCATGCTTGAGATGAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAG
ATGTTGTAGATCTTTAGCCATTTTTGTCAAGTCTCATGAATGTGTAACACATCTGGTCACCGCCTTCGAGTGGTTTGACGGGCACATCTCAGGCTAAAGT
TGACT