Detailed information on CNT30690864


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100352Oryza sativaOryza rufipogon36.6622.7699.51816forward
CNT30550642Oryza sativaOryza brachyantha7.9129.0490.34176forward

Expression of CNT30690864

Peptides detected in this lncRNA

>peptide 1 (39 aa)
FLTHPMPLVAATSFRSHPSLHIYMHTAISLLYVYHSLQP*

>peptide 2 (34 aa)
MAWRGVAMCIGCVDRACRSRSISSSPCHAFPQLS*

>peptide 3 (59 aa)
MFKECSFISEVWNKICIWKGLDHNSLPNNLDLKSWWCSLSAIQPKPHQKRIMGCLITSW*

>peptide 4 (57 aa)
MAASGRNPSENSPWEPACLHCTATPSMGTERTICMRAWLALSDKIPEGVFFMLKLKV*

>peptide 5 (53 aa)
MPFHSFLELLLCLTHFHYWRDMHHQWKLIGRGVQEEGQESCGKKWHYKDFEFS*

>peptide 6 (47 aa)
MLIFHFIDTGAIGSILFVGRHLKALLTCSRNVLSSLKCGTKSVFGRG*

>peptide 7 (30 aa)
MPCLSTAFLNFSCASLTFITGEICIISGSL*

Sequence

>CNT30690864
CTTTTTAACCCATCCAATGCCCCTTGTTGCTGCAACCTCATTTAGATCTCATCCTTCTCTTCATATATACATGCATACTGCTATAAGTCTACTGTACGTC
TACCACAGCTTGCAGCCATAAAGCTCTTCGTCCTCTCTCTTTCTACGGCTGTGGAGCTGAAGCATGGCCTAGCTGAGCTAGCAGCTGGTTCTTGGTTATA
TAAAGAGAGATAGCTAGGATCAAGAGAGAGGCAGATGGCATGGAGAGGTGTTGCAATGTGCATTGGATGTGTAGATAGAGCCTGCAGATCTCGATCGATC
TCTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCTTGTGCCTCACTCACTTTCATTACTGGAGAGATATGCATCATCAGTGGAAGCTT
ATAGGGAGAGGAGTGCAAGAAGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATTACAAGGACTTTGAATTCAGTTAGCAATGCCATGAGACAGGCAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTGATGCTAATTTTCCATTTCATTGACACTGGAGCGATTGGATCTATCCTCTTTGTAGGG
AGGCATTTGAAGGCACTTCTCACATGTTCAAGGAATGTTCTTTCATCTCTGAAGTGTGGAACAAAATCTGTATTTGGAAGGGGTTAGATCACAACTCTTT
GCCTAACAACTTGGATTTGAAAAGCTGGTGGTGCTCTCTTTCAGCCATTCAACCAAAACCCCATCAAAAAAGAATTATGGGTTGTTTGATCACTTCCTGG
TAGAACATCTGGTTGGAGCGGAATAAGCGTATATTCCAAAAAACTTTGTCATCGGCTGATAGGGTGGCTTCCTTGATTCTGCAAGATCTTGACCTGAGAC
ATTCAGCTTTCCAATCTCAGTGAGGCCGTCCCTCTTTTTGTAATTTTTGGTTTTTTTCGCTTTGCTTTTGTGCTCTGTTTTTGTAAACAACTTTTTCTTC
TTCTAATATATTCCTGCAGCCCTTCTGCGTCGTTTCCCTAAAAAATAAATATAATGGCATATTCAGAAAAAAAAAAGACTATACTGTAGCAAAATTAAGG
GGGAAGTTTAATGGGCCCACTCTCTGAAAGGCTGAGGCAGGGGATTGGGTAGTTCCATATCCTGTCAAGCTGGAGAAGTATAGGCTTTTGCTTTAGAGAG
TCCCACAGGCAGTGAGGCAGTGACAGAAGGCAGCTTTCCCTCCTGCTCACTCCACCTCTCTTTCCTCACCTCAGCTCAGCTCAGCCCAGCCCGCTTCAGA
GAAGGAAGCTCACTCACCATGCATCCATCGCAACAAAACAAAAGAGCAGGGACGGCACATGGCGCCAACGGGGGGGGTCACTGAAACGTGGGCCCCACCG
CTGGTCCAGGCCCACATGTAGTGTCAGTGGCTCGTGCCGTGACAGGTAGGCTGCTCTGCTCATCTCCGGAATCTAGATCGATCTCACTCGCCCTGTCTGT
CGTCGTCTCGCTCATGTCACTCGTAGGGAGATCCGAGTAGAAGGAGAAGAAAGAATTTGGATGAATTCCACTGCAAGGAAGGCAAAGGCAAAGGGAGCAA
AAGCACAAGGATGATGATGTTGGATGGCTGCTTCAGGAAGGAATCCCAGTGAAAATTCTCCCTGGGAACCTGCCTGCCTGCACTGCACTGCAACCCCCAG
CATGGGGACAGAAAGAACAATATGCATGCGTGCGTGGCTGGCTCTCTCAGACAAAATACCTGAGGGTGTGTTTTTCATGCTAAAATTAAAAGTTTAGTTG
AAATTAAAACGATGTGACGAAAAAGTTGAAAGTTTATGTGTGTGAAAAAGTTTGGATGTCATAAAAAAGTTAGAAGTTTAAAGAAAACTTTGGATCTAAA
CTCAGCCTGATGTGATTAAGCTAAAGTAGGAATAAATGAACAGTAACTCCAACACACCACTTCATTTCACTTTTGACCGGTCACTGAGACCCTTCTACTG
AAGTATGAACCCCATGTAAATTAAAATGCAGATATATATGTACAAACACAGGTGCAATGAAAAAAGGAAGTTGAATTCCTGCCGGTTTATAGTCAAATGA
ACTCCAACATTAGGCAACCGACCAGATCGTATGTCTGACAGAGAGTAAACACATGAAGCAACAGTGCATGTATCCCTGTTCTTGAATCATCCGTGCAACC
CCAAGCCCCAGCTAGGATTCTTTGGC