Detailed information on CNT30690856


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552861Oryza sativaOryza glaberrima37.5820.591.13124forward
CNT30100556Oryza sativaOryza rufipogon65.1527.56100215forward

Expression of CNT30690856

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTPRVCVPQCHALFTRASQPPSRWLVVLHSLPTPY*

>peptide 2 (52 aa)
MPRSLHARESTSFEMVSRSAFSSHSILVPSICAGLLSTHFTANCKSVIVSIRL

>peptide 3 (48 aa)
TVLRQCQGWPGQSGGASLPCEVAHSGCSAKCSSNLYRAAASVAIGAGG*

>peptide 4 (43 aa)
LFYDNARAGLVRVEALPFPVRWRTQGVRRNARVTCTGRQRAWP*

Sequence

>CNT30690856
AACTGTTCTACGACAATGCCAGGGCTGGCCTGGTCAGAGTGGAGGCGCTTCCCTTCCCTGTGAGGTGGCGCACTCAGGGTGTTCGGCGAAATGCTCGAGT
AACTTGTACCGGGCGGCAGCGAGCGTGGCCATAGGCGCCGGAGGATGACGCCGCGTGTGTGCGTTCCGCAATGCCACGCTCTCTTCACGCGCGCGAGTCA
ACCTCCTTCGAGATGGTTAGTCGTTCTGCATTCTCTTCCCACTCCATACTAGTGCCTAGCATTTGTGCTGGTCTTTTATCCACGCATTTCACAGCCAACT
GCAAATCTGTAATCGTATCTATACGTCTGA