CANTATAdb - search

Detailed information on CNT30690838

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENJ5|RR16_ORYNI, E-value = 3e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30435419	Oryza sativa	Aegilops tauschii	36.86	77	89.6	673	forward
CNT30424174	Oryza sativa	Papaver somniferum	12.76	44.89	90.99	233	forward
CNT30576782	Oryza sativa	Oryza barthii	40.25	71.64	99.86	735	forward

Expression of CNT30690838

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MDHSGYLKNRGSRSFLLNQRKKKKKEPFLLIKYYKKNLSLS*

>peptide 2 (40 aa)
MFSETENERIRTASNLRVYKRKKFSLINFMSRAEYNTISSF

>peptide 3 (36 aa)
MKYSSKKGNKQVCLRLIYYGISILNRGLEMINPILK*

>peptide 4 (33 aa)
MKRKFFGSYRILVFLRLEYQKKEKNEVKKTHFL*

Sequence

>CNT30690838
AAAAATCAATGGAATTACACCGCACACCCCTGTCAAAATCTTAAAATAGCAAGACATTAAAAGAAAGATTTTATCACCATTGAAAACACTCAGATACCAA
AAGGAACGGGTCTGGTTAAATTTCACTAAGGTTAAAAGTGGCACCAATCACGATCGTAAAATTGTCATTTTTTTAGCATTTTTATTTAAATAAATAAATA
AATCTTGTATGAGAGTACAAACAAGAGGGACAACCCTACCATTTGAGCAAAGTGTAGGCAAAAAACCTAATAGGGAGTGAGGATAAAGAGACTTATCCAT
CTACAAATTCTAGATGTTCAATGGACCTTTGTCAATGGAAATACAATGGTAAGAAAAAAATTAGATAGAAAAACTCAAAAAAATAAAGGCTTATGTTGGA
TTGGCACGACATAAATCCAGTCAAAAATAGGATTAAGAAAGAGGCAAATTATTTCTAAATAGTTAGACAACAAGGGATACTAGTGAGCCTCTCCTAGTTT
TTTATTCATTTAGTTCTTCAATTAACTCAAAGTTCTTTCTTTTTCTTTAAAGAATTCCGCCTTCCTTAAAATATCAGAAACGGTTCTTGTAGGTTGAGCA
CCTTTTTCAAGGAAATAGAGAATAGCTGGAACATTTAAACAAGTTTGATTCTTTATCGGATCATAAAAACCTACTTTTCGAAGATCTCTTCCTTCTCTTC
GAGATCGAACATCAATTGCAACGATTCGATAGACAGCTTGTTGCTTTCTACCACATCGTTTTAAACGAAGTTTTAACATAACATTCCTCTAATTTCATTG
CAAAGTGTTATAGGGAATTGATCCAATATGGATGGAATCATGAATAGTCATTAGTTTCGTTTTTTGTATACTAATTCAAACTTGCTTTGCTATCTATGGA
GAAATATGAATAAAAGAAATTAAGTATTTATCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAAATATAGTTCG
AAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTCCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAG
AGAAGAATTGACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTAATTTAATTAATATATTAGATTAGCAATCTATTTTTCCATACCATTTTT
CCGTAACAAAACTAATTAACTATTAACTAGTTAAACTATTGCAATGAAAAGAAAGTTTTTTGGTAGTTATAGAATTCTCGTATTTCTTCGACTCGAATAC
CAAAAGAAAGAAAAAAATGAAGTAAAAAAAACGCATTTCCTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAA
CTCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATTCTGGATATTTAAAAAATCGCGGATCGAGA
TCGTTTTTGCTTAACCAAAGAAAGAAAAAGAAGAAGGAACCTTTTTTACTAATAAAATACTATAAAAAAAATTTATCTCTATCATAAATCTATCTCTACC
ATAAAGGAATAGGTCTCGTTTTTTATACAATGTTCTACGTCAAGTTTAAAATTTTTTCATGAAAAAAAGATTTTCAATTTGACTGGACTTGACACTGGAT
TATGTTTTCTGAGACAGAAAATGAACGCATTAGGACTGCATCGAATCTAAGAGTTTATAAGAGAAAAAAATTCTCTTTAATAAACTTTATGTCTCGTGCA
GAATACAATACGATTTCATCTTTCGT