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Detailed information on CNT30690835


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6END4|RK22_ORYNI, E-value = 3e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30198622Oryza sativaPisum sativum34.8639.2485.89319forward
CNT3093954Oryza sativaSolanum tuberosum50.8228.4191.61465forward
CNT30314546Oryza sativaCamelina sativa52.3553.494.99479forward
CNT3077259Oryza sativaBrassica juncea43.9345.1294.03402forward
CNT30717682Oryza sativaMalus domestica golden8.5233.1997.4478reverse complement
CNT30360899Oryza sativaLactuca sativa52.2484.7593.93478reverse complement
CNT30103751Oryza sativaOryza rufipogon24.2698.6799.55222reverse complement

Expression of CNT30690835

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVFFMGELRPRARGLNLFIIVLLLTSALVMNKFALSKSL*

>peptide 2 (34 aa)
MDLKIISISLLYLVQLLYDTWFFLWENYVLEPEV*

>peptide 3 (33 aa)
MTHGFFYGRTTSSSPRSEFIHNSTPTDFGFSDE*

>peptide 4 (54 aa)
MWMRFCALKTRSNLSRRSVGTFLASFLSPLFFFFILGLRVPSSGLCSSCSIQIE*

Sequence

>CNT30690835
CGGGAATCAAATCTTAGATGGATCTAAAGATTATTTCGATTTCTTTACTATATTTAGTACAATTGTTATATGACACATGGTTTTTTTTATGGGAGAACTA
CGTCCTCGAGCCCGAGGTCTGAATTTATTCATAATAGTACTCCTACTGACTTCGGCTTTAGTGATGAATAAATTTGCTTTGTCGAAATCCCTATAATGAG
TAGCATTTGCTGCTGCCGAATAAACCAACTTTAAGATGGGATAAGATGCTCGATAAGGCATGAGGTTCAATATCATAACAGTTTCTTCGTAGTAACGCCA
ACGAATCTCATCCAGAACTCTTTGTACTTTGAAAACGGACATGTGGATGCGTTTTTGTGCTTTGAAAACCCGTTCGAACTTAAGTAGACGATCGGTTGGT
ACTTTTCTTGCGAGTTTCCTTAGCCCACTCTTCTTCTTCTTTATCCTAGGTCTCCGCGTTCCGTCATCTGGCTTATGTTCTTCATGTAGCATTCAGATCG
AATGACTCTATGAAATTACGTCGATACTTCTACATATTATGGGTAACGTAGGAGACATCCCTATTTTCCCCCGGGGGTCTTAATTACCACTGCTTAGCTT
TCAATTCGCCTCTGACCATCAAATTAAATGTGAATAACCCGTCCTCCTCTCTTTGAAACAAGGGGCGCTTCCGGTTCTGTGCGTGCTTCAAACAATTTTG
TCTTCTCCATATTACCATATCTCTAGAGTCAATAATTTTCTATGAGGAACTACTGAACTCAATCACTTGCTGCCGTTACTCAACAGTTTTCTGTTGAGGT
CTATCCCGTAGAGGTAGTCAAATTGGATCAGTGATCGATTTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCCAATTACGTAAATCAATAGTTCAAAC
CGCACTCAAAGGTAG