« Back to Oryza sativa search


Detailed information on CNT30690827


BLAST search results

BLAST vs Swiss-Prot:
sp|P08834|NU1M_CITLA, E-value = 9e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523471Oryza sativaSetaria italica19.4334.6393.47536forward
CNT30549210Oryza sativaIpomoea triloba24.6957.6184.14681forward
CNT30187493Oryza sativaSecale cereale16.3299.1298.67450forward
CNT30220010Oryza sativaHordeum vulgare29.0429.9296801forward
CNT30401101Oryza sativaTriticum turgidum41.8494.8296.791154forward
CNT30592607Oryza sativaMusa acuminata7.5849.2984.69209forward
CNT30437037Oryza sativaAegilops tauschii12.5510097.98346forward
CNT30664530Oryza sativaTriticum dicoccoides12.9810099.44358forward
CNT30598800Oryza sativaFraxinus excelsior13.4910093.55372forward
CNT30228621Oryza sativaAnanas comosus11.1774.0497.08308reverse complement
CNT30207841Oryza sativaHelianthus annuus22.2322.8889.56613forward
CNT30687453Oryza sativaTriticum urartu89.6746.2594.542473forward
CNT30480890Oryza sativaArabidopsis halleri11.7897.692.62325forward
CNT30354619Oryza sativaLactuca sativa15.2625.2792.64421forward
CNT3056169Oryza sativaAmborella trichopoda13.1399.4588.95362forward
CNT30103479Oryza sativaOryza rufipogon28.5453.2599.62787forward
CNT30577864Oryza sativaOryza barthii4.2821.15100118reverse complement
CNT30495778Oryza sativaDigitaria exilis13.6790.1997.88377forward
CNT30115707Oryza sativaOryza nivara10063.399.892758forward
CNT30175599Oryza sativaVigna angularis23.3539.982.61644reverse complement
CNT30557320Oryza sativaPanicum hallii16.110098.65444forward
CNT30335348Oryza sativaCynara cardunculus12.9498.6291.88357forward

Expression of CNT30690827

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTYLIRLKLMSKTRSFTSISAGRKGAEATV*

>peptide 2 (90 aa)
MNRTSTSSVTPTALTALYPNPTCSGPGSSRISSSVSGPWKLGGIRLGLIENSISFLSLLTPKKNIVEVRSRRRHLYLILRLRRPAPQKFC*

>peptide 3 (39 aa)
MVPQDPINLLRSTLPRYCSMEAGGLLFSFRSSARFFLYF*

>peptide 4 (34 aa)
MRCSKGEANASLATRESSKSESIHLLANTGSSKI*

Sequence

>CNT30690827
CGGGCGTCTTCCACAAAGTCAAGCTAGAGTAAGTGGCGTAAGATAAGATAGATGTTCACTTTCATCGACCAATGTACCTGAAATTCCTATACGTAAAGTC
GAGAGCTAGAGAGAGTAAATGAGATGTTCAAAGGGTGAAGCTAACGCTTCCCTGGCCACTAGGGAGTCATCAAAGTCTGAGTCCATACACTTGCTAGCTA
ATACTGGATCGTCAAAGATCTGATTATATTTCATAATACTTTCTGTCTCTCTCCTAAGGGATCCAATCAGAAGGAATTCCCTCAGTTCGCTCATGATAGT
CGCTCGAGTTCCCTTTTCCTTTTTAGTTGAGTTTCGCCTCTCCTCCTTTCCTTGTCTCCATTGTGATTGATTCGTTTCTTCGCGCAAGCACTTGGTTCGC
CCCTTACTATAACCATCCCACTCAATCTTTTACACCGATGTTTCGTACTCTCTCGACCAGGTCATCATAAGAAAATACTGCCAAATCTTTCCGAAATGAG
AGAAGGAGGGAAGGCGCGCTACAACTAACTGCTGAAAAACGCAAGATTAGCGCTAAGAAGCAACCCTAGTTTAAGTACTAGCGTCCCACCCCAACGTTCT
TGTACTTAAAAAGACTCTCCCCGCTTGCTGCTCGCCTCAGCCAGACGTGGCTTATGTAGTGGTCGGCATTCCTACGTGCTCCGACTGATCCCCACAGGAG
ATTATGTGAGGGGTCTTGGAAACTGTCGTGACGCTTTGGTGACGAAGGTCACCGGGGTGACTATGGAAGGATTCCGTGGTAGTCTCTGACTCCCTCCAAC
TCAATCAATATCAAGAACATGTCGTGAGCATGGGGTTTGGTTAGGCTTGGTTGAGTTTTGTAAGAAAAGATAGTAGGTTGAGGGGCTTCATTGATTAGTA
AACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGGCCGATAAGATCACTGAGATTGACCAGCCAGCTGGGTAGGTTTGGCT
ATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTCACCTTCCTTAGGCTCCGAGTCACCTTCTTCTAAGCTCCGCTGGACGACACGGCATTCTC
GTTCTATAGGCCGGCCGTACTTGTGATGGTTCCCCAGGATCCAATAAATCTACTTAGGTCTACGTTGCCGCGATATTGTTCTATGGAAGCGGGTGGGCTG
CTTTTTAGTTTTAGAAGTTCGGCCCGGTTTTTCCTTTATTTTTAAAGGGGGACCTTTCTAACGCATATTCTGTCGTACCGGCATGGCCCCACTGATTTGT
TTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAAGCCCCGTGCTCGCCCAAGGAGGGAGTTTGCTTTACCCAACTCCCCTTTTTGATA
ACAAGGCAAAAACCTCCGACCCGACATTCATGAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCTCTTTTTTTTCCCTAAATCTTGGATTTGGAAGTT
GGTAAAGACCCACCCCTTGTTTAAGTCAGAATGAGTCCCCGAGACATTGGCTTCCGCCAACAGTGAACTATTAAGGATCGCATCCCGCGCATATTCCACA
TTATAGCCAGCAACTGATTCAGCTTCCGCTTCTGGGAGATCAGACGGAGCTCGATTAGTTTCTGCTAGACAAGGAATAAAGAACATAACCAATACGGGGA
ACAAGGGAATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCACTCGAATTACAGGGACCTACACATATTAGTACAGTAATAAGAATAAGACCAAT
AGAGACTTCATAAGGGACCATTTGAGCTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGACGTTCCCAACAATCCACGAGAATATCA
TACCCAACTATGAACCGTACGAGCACATCCTCTGTCACCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTGCTCTGGCCCTGGGTCCTCCCGCA
TCTCTTCCTCGGTAAGCGGACCGTGGAAGCTGGGGGGTATCCGCTTGGGACTGATAGAAAACAGCATATCTTTTTTGTCCCTCCTGACCCCTAAAAAAAA
TATAGTTGAAGTCCGGTCGCGTCGGAGACATCTTTATCTGATTTTGAGGCTTCGTCGTCCGGCTCCTCAAAAATTCTGTTAGGATCGGCTGGCTCATCCG
AAAAGAAAACAGAGACAAAACGGATTTGTTTCAATGACATATCTAATCAGACTGAAATTGATGTCGAAGACACGATCATTCACATCAATTTCAGCAGGCA
GGAAGGGCGCGGAAGCTACCGTTTAACGAATGCAAGCAAGGTAGCTTGCTTACTCTCCATCTAGCGCGCGTTGGCGGCAAGGAAGGAGGCATTGGAAAGA
CTAGACCATACACATTAATTAGTACAAGAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCTGGCGAAGCTTAACAAAGGCCGACTACTACATAGAGACAA
CTACCAGTCATGAGCGATAGTGAAGCCGTCAGAGGCAGAAGCTGTCGCTTGACGGACGAAGCCGAGCCGATACGATAGGCGGGCGAAGTGAGCGAGACCA
AGACGGGCCAGACGTGGGGGGCCTACTATACGTATACGTGATTAGTAAGTGGTTCAAGACATCGAAGTGAACTATTGAACAGTGATCAGACAAGTACCAA
GGAGCAAGAAAACGTATGCGCAGGCGCAAGGGATGAGCGCGAAATCCGTTGCTTGTTC