Detailed information on CNT30690805


BLAST search results

BLAST vs Swiss-Prot:
sp|Q65XK0|ILV5_ORYSJ, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30456600Oryza sativaSaccharum spontaneum26.1625.9889.0473forward
CNT304607Oryza sativaZea mays26.1626.5589.0473forward
CNT30363999Oryza sativaSorghum bicolor26.1625.6187.6773forward
CNT30100020Oryza sativaOryza rufipogon35.1343.9510098forward

Expression of CNT30690805

Peptides detected in this lncRNA

>peptide 1 (62 aa)
LLEDGCLEVQRRHGGPDHLRRRDLGGHGAAAAAAAGGGGEGAWGLGGGEGDRAGGRGFGGGV*

>peptide 2 (89 aa)
FLKTDVSKSSDGMVAPITCGDETLAATAPRRRRPPAEAARGHGGWAAGKETEPAAADLEAGFRVLGWASAVEEVEVAAAILGCEEGLRV*

>peptide 3 (87 aa)
MSRSPATAWWPRSPAATRPWRPRRRGGGGRRRRRRGGMGAGRRGRRPSRRPRIWRRGLGFWGGRARWRKWRWPPPFWDARRGLGCDCG

Sequence

>CNT30690805
CCTTCTTGAAGACGGATGTCTCGAAGTCCAGCGACGGCATGGTGGCCCCGATCACCTGCGGCGACGAGACCTTGGCGGCCACGGCGCCGCGGCGGCGGCG
GCCGCCGGCGGAGGCGGCGAGGGGGCATGGGGGCTGGGCGGCGGGGAAGGAGACCGAGCCGGCGGCCGCGGATTTGGAGGCGGGGTTTAGGGTTTTGGGG
TGGGCGAGCGCGGTGGAGGAAGTGGAGGTGGCCGCCGCCATTTTGGGATGCGAGGAGGGGCTTAGGGTGTGACTGCGGG