« Back to Oryza sativa search


Detailed information on CNT30690797


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552282Oryza sativaOryza glaberrima26.3237.99100215forward
CNT3066731Oryza sativaLeersia perrieri17.0121.5893.53139forward
CNT30574614Oryza sativaOryza barthii26.3236.75100215forward

Expression of CNT30690797

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MGMLPKPPRPPGVEPLLPGRLNPGMLLPGMPPNAGTALPKRSNGGNVVGCTTVSLLSAAAAAAALMFLASAAPT

>peptide 2 (52 aa)
MQRRALHRAHYPRSSGDAAGDGEVSRRRGRRTWACCRSRRGRRGWSRCCRGG*

Sequence

>CNT30690797
CCAAGGGACAGTGTAGAACCTCAACTCTGACCATATTCAAACACATAAAATGCTGAGCACGATCAGTAATTACTTCTACCTCTGTTTCAGAATATAAGCA
TTTCTCCACATTTCTAAAATTTATCTGAAACGGAGAGATGTGATGTGACACACCAGAAATGCTTATGTTTTGAAGCAGAGATAGTAATATATATAGCCAT
CACCATACAATAACACAATAATGATCACATTTAGCATTATTCATGCCTCGAGCTCGAAACAGTGGTAGTACTACTACATGATCACGAACTTAATTAAAAC
ACAAAATATAAGAAGGGACCTAATTAAAACAAACAAACACAACCAACCAACAAACAGATAGAATAATCCTCCTCCAAATGCATGTAAAGAAAAGAGATAG
AAGAGACACTACTCATAATAGAACGCTAGCTAGACACAGTGCAAGCTAACTGCACATATGAAGATATAACGCGCGCGCGTCATATAGCCATCCATATTGC
ATGCAACGCCGTGCGCTACATAGAGCACATTACCCGCGCAGCAGCGGCGACGCCGCCGGCGACGGCGAGGTGAGCCGCCGCCGAGGCCGCCGAACATGGG
CATGCTGCCGAAGCCGCCGAGGCCGCCGGGGGTGGAGCCGCTGCTGCCGGGGAGGCTGAACCCCGGGATGCTGCTGCCGGGCATGCCGCCGAACGCCGGC
ACCGCGCTCCCGAAGCGGTCGAACGGCGGGAACGTCGTCGGCTGCACCACCGTGTCCTTGCTCTCCGCCGCCGCCGCCGCCGCCGCCTTGATGTTCCTCG
CCTCCGCCGCGCCGACC