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Detailed information on CNT30690727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000260, E-value = 7e-176

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30455311Oryza sativaSaccharum spontaneum44.4627.9584.66313reverse complement
CNT30353440Oryza sativaEragrostis tef31.3916.8885.97221reverse complement

Expression of CNT30690727

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MNLIDNMIWSCVQSSFPQPKKMSTSIYFVCPSQGNVVSVLFIPM*

>peptide 2 (31 aa)
TKEFCEAWILGLPTNLRTSSRILHLLTQWTI*

>peptide 3 (36 aa)
RPRNSVKLGYLGSQPISERVLEFSIFLPSGPSNTNQ*

Sequence

>CNT30690727
AGACCAAGGAATTCTGTGAAGCTTGGATACTTGGGCTCCCAACCAATCTCAGAACGAGTTCTCGAATTCTCCATCTTCTTACCCAGTGGACCATCTAATA
CTAACCAGTAAAACCTTGGAACTTCGTGTCAAATTTTCCACTTCTGTTAACAGAGTCCATTATTTCTTGCCTGAAAAAGGCTTATTGTCACAGCCCAAAA
AGATTCGACCCCTGTGTCCCTTTTTCATTATGGCAATTGCAAGGGAAGCAGCATCCTCATAATGAATTTGATTGATAATATGATCTGGTCGTGTGTCCAA
AGTTCCTTTCCTCAACCAAAAAAAATGAGCACCTCTATCTATTTTGTGTGTCCAAGTCAAGGAAACGTTGTATCAGTTCTCTTCATACCAATGTAAAAGA
ACTTGCGTTAATATTGCTTGCACTTTAGAACAACAAATAGTCATCAATTGAGGATATATAGAGTCCTGCTAGCCTGAGGACACAGCCTCCTGCCTCAAGA
ACAACATTCTCTGCTTTTAGAAGGACGTCAGTACGAGGGCTTCTGCCAATTGGCACAGATGGGCAATCCTCATTGCACAATTCGTTGTCACTACAATCGT
ACAGAGCAGTACTTGATGTAAAAACGAAAGAGCCTTCACCAGTCCAATTTGAGGCAGCTACTCTGCACGCATTTTCTGAAATAAGAATACATCACATGTC
CATG