« Back to Oryza sativa search


Detailed information on CNT30690669


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099472Oryza sativaOryza rufipogon71.8915.1498.15918forward
CNT30115494Oryza sativaOryza nivara71.5724.2198.69914forward

Expression of CNT30690669

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLNGLMLEAMCAHFSLCQPFDLSFSLSPSCVILFSHIYLL*

>peptide 2 (42 aa)
MGFGGLTEESEHTRCFLSMQEPCWELCVLTLYLSAVHHAQYD*

>peptide 3 (45 aa)
MISSSEEATTSYLASCLTLLGLCFCVLVGVVRRKRGVRGEADRRE*

>peptide 4 (54 aa)
MDSCLKLCVLTSLSVSHLISLSLFLPHVLYCSLISIFFEVVIYLSKLSCLIICV*

Sequence

>CNT30690669
ATCCAAATCAACAGTAATGTTCTACAGTTAGTGAGATGTAGAGAGAGATATGGCTAGCTAATCCATGAGAGAGGTCTAGATAGAGAGAGGGAGAGATGAT
CAGTTCTTCAGAAGAGGCTACTACTAGCTATCTAGCTTCATGTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTTGTTGGAGTTGTTAGGAGGAAGAGA
GGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCT
CTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTGTTCTCTCATATCTATCTTCTTTGAGGTAGTAATATACTTGAGCAAA
TTAAGCTGCTTAATTATTTGTGTATGATGATCAGCTGCTGATCCGGCCTCATTTCTTGCATATATGACCACAACCACATACATGCTTGTTCATTTTTTTT
CACAAAGAAAGAGAACAGTTTAATTTAATTTCTTGGGGTTTTTGGATCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGA
CAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCA
ATATGATTAATCTCCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCTAGCTATTATGCACATGCTTATTATGAT
GAGCCTGCCAATATCATCTCCACGGCAAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAGGCATACAC
TAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGTCGTCAGAAGAAGGTGTGCATTGGTTTAATTTTTGTTCTTGGC
TGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAATAATTATTGTGAGCACCGAAATCGATCATGCGTACTCTCTCTGTGAAGTATTTCTGA
GAAATAATATGAGTGTAGCTAGTATATATACTCTTGAAGGGTGTCTAATTAATTGGGGTCTCTAGCTAGCTCCTTCTCTGAATCTGTCCATGAATTGAAT
CTACTATGTATGTGCTGGTGCTTACTGTTATTTCATGTACTACATATAATTGATAAATCAATTTAGGCTTTCAGTTT