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Detailed information on CNT30690663


BLAST search results

BLAST vs Swiss-Prot:
sp|F4HQ20|LRL25_ARATH, E-value = 6e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30389603Oryza sativaTriticum turgidum19.4269.3683.75240forward
CNT30149097Oryza sativaBrachypodium distachyon21.6810085.82268forward
CNT30580031Oryza sativaEchinochloa crusgalli10.8422.1587.31134forward

Expression of CNT30690663

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLITSFTNSSPFPFESCKNFTATIRPSCNLPLNTTP*

>peptide 2 (53 aa)
MRASMFLSLVLLVFVQRRCRSFFPFLCHISTYRHGKSKPAAAAVKTEIKTHVIS

>peptide 3 (40 aa)
MNPIVPLAPVIESLLSLVRHSLAKPKSAIFGQKSWSRRMF*

Sequence

>CNT30690663
TCTTACTTTCTGTATACTGCAGATCATCTTGTTGCATAGTTGGTAGTCACTGTAGGGTCTTTTGAATTCACGAGGCTTGTCTCCTCAACCTTTAGCACTC
CACTAAGCTTTCCACATAAAAATGTGTAGAGAAAGTGTCTTACAGTAATTCACTGAAATTTTGTTTTGGTGGCATTTCCAGTTCATCCAAACCTCTCTCG
AACATATCTAAAACCTGGGTTATTGTTGGTCGATGCATAGGTAATACTTGTACACACCACAAACCAATTAAAGTCATCTTTTTGGCAATTTGCTCAACCT
CACTTGTGACTTGACAAGCTTGTAATCCGTCATCCAGAGCAAAGTGATCATAAATCCAATCTGGAAAATACTTTTCACTTGAATTTTCAACCATTTGTTT
CGCATTTTTCCGGCCTCCGACCATCTCTAGCAGCATCATTCCATAACTGTAAACATCTGACTTTGTTGAAACAACTCCAAAGGTTCGATAGATAACTTCA
GGAGCGATGAATCCAATTGTTCCTCTAGCACCTGTCATTGAAAGCTTGCTCTCCTTGGTACGGCACAGTTTGGCTAAACCAAAATCAGCAATCTTTGGGC
AAAAATCCTGGTCTAGAAGGATGTTTTGAGGCTTTATATCGAAATGGATGATTCGTGTGTTACAACTATGGTGCAAGTATTCTAGCCCACGGGCAACCCT
GATTGCAATTCCGTAAAGTTTTTCCCACCCTAGAATTTCTTTGGGATTTTCTGAATAAATATAGTTGTCCAAAGAACCATTGGGCATGTACTCATAAACA
AGAGCTCGTTTTGAGCCCTCCAAACAAAACCCAAATAAGCTAACGATATTAATATGAGAGGTCCTGCCAATGCTCATAACCTCATTCACAAACTCCTCTC
CATTTCCTTTTGAGTCATGCAAGAATTTCACAGCAACCATACGACCATCTTGTAACCTTCCTTTGAATACGACACCATAACCTCCTTCTCCAAGCTTATA
ATTAAGAAATGATGTTATCTTTGTTACCTCTGAATACTTGTATCTTGTTGGAGCTATGGATCCATAAGATTCTATGAGGGCCTCAATGTTCCTTTCACTG
GTGCTGCTAGTCTTTGTGCAAAGGAGATGCCGTAGTTTTTTCCCCTTCCTATGCCATATCAGCACATATAGACATGGTAAGAGCAAGCCTGCTGCTGCTG
CTGTCAAAACTGAGATTAAAACTCATGTTATTTCCT