CANTATAdb - search

Detailed information on CNT30690660

BLAST search results

BLAST vs Swiss-Prot:
sp|A2WXD9|PSBS1_ORYSI, E-value = 2e-36

BLAST vs NONCODE:
NONORUT005704, E-value = 5e-100

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30222634	Oryza sativa	Hordeum vulgare	9.09	22.78	94.44	72	forward
CNT30456759	Oryza sativa	Saccharum spontaneum	17.05	28.85	91.11	135	forward
CNT30100105	Oryza sativa	Oryza rufipogon	27.02	4.14	89.25	214	forward
CNT30115512	Oryza sativa	Oryza nivara	20.33	4.66	89.44	161	reverse complement

Expression of CNT30690660

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TSICKLLLGFTEFTFICLRNNLLKFKSNLDIS*

>peptide 2 (78 aa)
MMRKHNNGGETSVDRSILVILLFVVVADELAGAGVDGGDEEEDDVEEDERLDLVDGDAGLDVELREGPARSGSPCPGR*

>peptide 3 (78 aa)
MAAMKKKTTLKRTSGSISLMGTPVSMLSCARAQRGAEALARGDDGLVEARHRLVVDEAAAVAERADGAEEGEEDEEEEE

>peptide 4 (35 aa)
MTALSRPVTGWSSTKLPRSPSAPMAPRRVKRMKKRR

Sequence

>CNT30690660
TTACTTCTATATGTAAATTACTTTTAGGCTTTACTGAATTTACTTTTATATGTCTAAGAAATAACTTATTGAAATTTAAAAGTAATTTAGACATATCATA
AAAGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACGAACACAACGGTGTAATCGTATTGTAAATCGG
ATGAGTAATTTAAGAGATAATTTTATTTCAAGCATAGATGCTCAATGGATTAATAGCAACCAAAACTCCTAAAGTATGGGTGTCTCTGGTTAAGACTAAT
TGGATAGGCATCTCCAATTAGATTTACCGCAGCAAGTAGCTAAATCTCACGTTAATTTTCTCCATGGGCATTAATTAACAACTAATTAAACAAGGTACGT
CTTTACACCTACACGTACACAGTACATATACACTTGAAAGAAAGTCTCAATGATGCGCAAGCACAACAATGGCGGCGAAACCTCGGTAGATCGATCGATC
CTCGTAATTCTACTCTTCGTCGTCGTCGCTGACGAACTTGCCGGTGCCGGGGTTGATGGCGGCGATGAAGAAGAAGACGACGTTGAAGAGGACGAGCGGC
TCGATCTCGTTGATGGGGACGCCGGTCTCGATGTTGAGCTGCGCGAGGGCCCAGCGCGGAGCGGAAGCCCTTGCCCGGGGCGATGACGGCCTTGTCGAGG
CCCGTCACCGGCTGGTCGTCGACGAAGCTGCCGCGGTCGCCGAGCGCGCCGATGGCGCCGAGGAGGGTGAAGAGGATGAAGAAGAGGAGGAG