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Detailed information on CNT30690639


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000270, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552148Oryza sativaOryza glaberrima50.7534.6799.11337forward
CNT30369267Oryza sativaOryza glumipatula50.642.2197.62336forward
CNT30574657Oryza sativaOryza barthii79.5287.4299.05528forward

Expression of CNT30690639

Peptides detected in this lncRNA

>peptide 1 (57 aa)
KRKKNRGIAPASPSRHISCVLPPPPLFLSPPAPPPPPVQPSSSFATPSARLLAWLAA*

>peptide 2 (76 aa)
KKEKKTGGSLLQALAATSPASYHRRRCSCLRRRRRRRRFSRRRPSPPHPLVSLRGLLLDAAASIRDEKAPDSTGSS*

Sequence

>CNT30690639
AAAAAAGAAAAAAAAACAGGGGGATCGCTCCTGCAAGCCCTAGCCGCCACATCTCCTGCGTCCTACCACCGCCGCCGCTGTTCCTGTCTCCGCCGGCGCC
GCCGCCGCCGCCGGTTCAGCCGTCGTCGTCCTTCGCCACCCCATCCGCTCGTCTCCTTGCGTGGCTTGCTGCTTGACGCTGCTGCATCGATCAGAGACGA
GAAGGCTCCAGACAGCACAGGAAGCAGTTGAACAGGAGTAACAAGGGAAGGAAAAGGTATGAAGGGTTCCAACGTTGAAGGAGTTGAGTCGGAGTATCGA
AGGAGTTAAAGCAAGTACAAGACGGACTTGTACCTAATGACATTGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACTAT
TGGAATTTAGTTTTAGATTATGTTTCTGCTTAGCATAAGTTTTGCGTAGAACTTGTAACGGTCATTTAAAGTTCCGGTCCTTATTTTCACGTGGAATTTG
AGGAGCTAGGATGGTTTGGATTGTGTGGATTATATCGTTATTGAGTTATCTTATAACTGACTGTCGTGGATGTCCGTAATTTTAGGAGGAGACTGCCGAA
ATTTCTAATAATTTTCGGAGTTAAGTGGTTTTTGAGTGTATTTTGGTATGGCACTCTAGGTACG