Detailed information on CNT30690629


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000696, E-value = 4e-130

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115713Oryza sativaOryza nivara55.2256.1399.16238forward

Expression of CNT30690629

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MKLFVSCGLMLASYFTSFTFTRPPLCLQETMGDPSFFSLFSFTNQIKTWIKVI*

>peptide 2 (39 aa)
ERVILMTKHARLSRKENVTCQKTSGFLSGFTLELHFIQA*

>peptide 3 (48 aa)
RESNTHDQARTPVKKGECHLSENIRISQWIYIGVAFYSGMRGEKWQLN*

>peptide 4 (35 aa)
MSLVRKHQDFSVDLHWSCILFRHEGGKMAVKLVTG*

>peptide 5 (39 aa)
MTNLWVADETFCQLRIDASILLHFFHLYKTTTLLARNHG*

Sequence

>CNT30690629
AGAGAGAGTAATACTCATGACCAAGCACGCACGCCTGTCAAGAAAGGAGAATGTCACTTGTCAGAAAACATCAGGATTTCTCAGTGGATTTACATTGGAG
TTGCATTTTATTCAGGCATGAGGGGGGAAAAATGGCAGTTAAATTAGTTACAGGTTGATAGGAAATGGAGAGATTATTACAGTTTATTTTTTTTCTTTGA
TGACAAATTTATGGGTGGCTGATGAAACTTTTTGTCAGTTGCGGATTGATGCTAGCATCTTACTTCACTTCTTTCACCTTTACAAGACCACCACTTTGCT
TGCAAGAAACCATGGGTGATCCTTCTTTCTTTTCTCTTTTTTCTTTCACCAATCAGATCAAAACCTGGATCAAAGTTATCTAACTCTTCAGGAAATGAGG
TCATTTTCATAGTCGGCAGATTTGCAGTATC