Detailed information on CNT30690617


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522807Oryza sativaSetaria italica17.9928.2793.52216forward
CNT30293057Oryza sativaTriticum aestivum17.4924.9786.67210forward
CNT30437732Oryza sativaAegilops tauschii16.9929.6988.24204forward
CNT3014485Oryza sativaZea mays7.6644.2390.2292forward
CNT30680887Oryza sativaTriticum urartu7.6632.1784.7892forward
CNT30339116Oryza sativaEragrostis tef14.1523.8488.24170forward
CNT30364121Oryza sativaSorghum bicolor14.2425.9991.81171forward
CNT3099938Oryza sativaOryza rufipogon29.3933.399.72353forward

Expression of CNT30690617

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MASPMRRPPSAPPSSPAPSPIPKLFFFAGFTACCW*

>peptide 2 (29 aa)
SQEKEQDRTQVDLGIILQRNSTTFCYNLD*

>peptide 3 (52 aa)
TLRKKNKIVLRLTLASFCSVILPPFVITWIKTPHQNSEAAAQDAHHNFPILN*

>peptide 4 (44 aa)
MWTSPTSRSPRARSARRRTWREPAPEKSNRKFVWTLGEIRSKSN*

>peptide 5 (58 aa)
MQQCQSSKKTEPPNHYCRFKLPYATCTIQLKQAIIDQVDERTSNQTRAAGHERFRLGA*

Sequence

>CNT30690617
ACTCTCAGGAAAAAGAACAAGATCGTACTCAGGTTGACCTTGGCATCATTTTGCAGCGTAATTCTACCACCTTTTGTTATAACTTGGATTAAAACCCCCC
ATCAGAATTCAGAAGCAGCTGCGCAAGATGCCCATCACAATTTTCCAATCCTAAATTAAAATTCAACTTGAAAAGCACGGCATGCAGCAATGTCAATCCT
CTAAAAAGACTGAACCACCAAATCATTATTGCCGCTTCAAATTGCCCTATGCAACTTGTACCATTCAATTGAAACAAGCAATAATTGATCAAGTTGATGA
ACGAACAAGTAATCAAACCAGAGCCGCGGGTCATGAAAGATTCCGATTAGGCGCTTAATTCATTCAAAAAAACAAAAACAAAAAAAACAACAGTTGACTC
ATATTTGTACTCCATCACATAGCTTCACCACATATATATGGTGTCAATTAAACTCCTATTTACATCATCCATAATTTGGTCCTGGCAGTAAACAAAATTC
AAAACAAAAACCAATACGAGATTATACGAAGATCACCCATTGCATCGATCTGTGTCATCTAGAAATCGAAGCCACCGCCGTCGTCGAACCCTGCGTCGTA
GCCGGCGTCATACGCCGACGCGTCGGAGATGGCGTCTCCGATGAGGAGGCCGCCGAGCGCGCCGCCGAGCAGCCCGGCTCCGAGTCCCATCCCGAAGTTG
TTCTTCTTCGCCGGCTTCACGGCCTGCTGCTGGTAGCCGCGGCGGCTGACCCATCGGCCTTCGCTGCCGTTGGGTAGGCGGTCGGTGGTGGGTAGGTGGA
TTGGGGCGGGTAGGCCGCGGCGGCGGCGGCGGAGGGCGGGTAAGCTGGCGCCGGTGGAGCTTGGCCGTACGCGACCGGAGGAGAGGCACCAGGGTAGGAG
CCGGATTGGGTTACCTCGCCGATCTTGTAGGAGAAATTGAGGACGCCCTGTGGCTTCCCGGAGGAGATCTTGCGGACCTGGTAGGAGACGAACTTGGCGG
GGACGGCGCCGTCGGGGGCGCCGGAGAGGAGCTCCGAGAGGGGGATGTGGACCTCGCCGACGTCGCGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAGGAC
GTGGAGGGAACCCGCGCCGGAGAAATCGAATCGAAAGTTTGTGTGGACTTTGGGTGAAATTCGATCGAAATCGAACTGATCAGATTTGTATCCGAATTCG
A