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Detailed information on CNT30690610

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30185545	Oryza sativa	Secale cereale	11.15	45.37	89.25	93	forward
CNT30595519	Oryza sativa	Oryza meridionalis	24.46	100	99.51	204	forward
CNT30369233	Oryza sativa	Oryza glumipatula	36.57	100	99.34	305	forward
CNT3099654	Oryza sativa	Oryza rufipogon	51.08	100	100	426	forward
CNT30574824	Oryza sativa	Oryza barthii	25.06	100	99.52	209	forward
CNT30497582	Oryza sativa	Digitaria exilis	24.82	99.04	89.37	207	forward
CNT30603436	Oryza sativa	Oryza punctata	30.22	99.6	94.84	252	forward
CNT30550503	Oryza sativa	Oryza brachyantha	28.06	50.43	91.45	234	forward

Expression of CNT30690610

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MNLIDNMIWSCVQSSFPQPKKMSTSIYFV*

>peptide 2 (45 aa)
METPHEFIKPEIEIYNRKQPKHKIQNSRLKSSFLDYNNKIYCNLI*

Sequence

>CNT30690610
GTCAAATATTTAGAAATGGAGGGAGTATAATCTAAAATGTTATGTGAGAACAGTATTTCTTTTCTTCGATATTTTGGGTAGTTTACAGCTATTTGTATTA
GGATAATGTAGTGATAACTACATATTTAGGAGTATATATAAGGTCATGGAAACCCCTCATGAGTTCATAAAACCAGAGATCGAAATATACAATAGAAAGC
AACCAAAACATAAGATACAGAATAGTAGGTTGAAAAGTTCTTTCCTAGATTACAATAATAAGATATATTGCAACTTAATTTAGACTGTCGAATGTATCTC
AACGCACTATAAATTATAAAATGGAATTGCATATGCTTTTATACAATCAAACAAGTTAGATCTAAATTATAAAAAGTACCAACTATGTATGGTAAGTAAA
CCCAAGTTCCACAGTTGTGATCACAATGCAAATGATACGACAGATAAAGAAAGAACAGCATAACAAGACATATAACTGAGATAAACTTGCAGCTCATTAC
CTCATAATGAATTTGATTGATAATATGATCTGGTCGTGTGTCCAAAGTTCCTTTCCTCAACCAAAAAAAATGAGCACCTCTATCTATTTTGTGTAGTCCT
GCTAGCCTGAGGACACAGCCTCCTGCCTCAAGAACAACATTCTCTGCTTTTAGAAGGACGTCAGTACGAGGGCTTCTGCCAATTGGCACAGATGGGCAAT
CCTACATAATGGGAGGAATAATTATGGTTAAAACAAAAACAATAAAGTTTTTCAACCGTCAAGAAAAAATATTTAGAGTTGCATAATATGGCTTGTGGAT
ACATTGTTTTTTTTTTAATGTCACTAGAACTTCT